Williamson C C - OmicsDI

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Unknown (1943)
Proteomics (94)
Transcriptomics (69)
Genomics (41)
Metabolomics (2)

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Homo sapiens (122)
Mus musculus (44)
Escherichia coli (9)
Haemonchus contortus (5)
Pseudomonas aeruginosa (4)
Pseudomonas aeruginosa PAO1 (2)
Danio rerio (2)
Caenorhabditis elegans (2)
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Saccharomyces cerevisiae (2)
Myzus persicae (1)
Arabidopsis lyrata (1)
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Zea mays (1)
Mycobacterium tuberculosis (1)
Bacillus subtilis PY79 (1)
Bacteria (1)
Bos taurus (1)
Chlorocebus sabaeus (1)
Ganoderma lingzhi (1)
Human gammaherpesvirus 8 (1)
Human herpesvirus 8 strain rKSHV.219 (1)
Penaeus (1)
Rabies virus CVS-11 (1)
Rabies virus Nishigahara RCEH (1)
Sarcoptes scabiei (1)
adeno-associated virus 2 (1)

Organisms

Danio rerio (1)

Repository

pride (93)
biostudies-arrayexpress (77)
EGA (32)
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Tissue

Cell culture (20)
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Disease

Parasitic helminthiasis infectious disease (5)
Chronic myeloid leukemia (4)
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COVID-19 (3)
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Human immunodeficiency virus infectious disease (1)
Huntington Disease (1)
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Krabbe disease (1)
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Lung cancer (1)
Niemann-Pick disease (1)
Non-alcoholic steatohepatitis (1)
Pre-eclampsia (1)

Technology Type

Mass Spectrometry (93)
Shotgun proteomics (48)
Affinity purification coupled with mass spectrometry proteomics (17)
Bottom-up proteomics (11)
Data-dependent acquisition (9)
Illumina 15K (8)
RNA mass spectrometry (6)
Data-independent acquisition (2)
MSE (2)
SWATH MS (2)
Illumina Genome Analyzer II (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
Mass spectrometry (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (4)
Illumina HiSeq 4000 (3)
Axon Instruments GenePix 4000B scanner (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq 6000 (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2022 (23)
2015 (18)
2026 (18)
2021 (15)
2023 (14)
2016 (12)
2012 (12)
2008 (7)
2024 (6)
2019 (6)
2014 (6)
2025 (6)
2020 (5)
2011 (5)
2013 (4)
2010 (4)
2017 (3)
2007 (3)
2018 (3)
2009 (1)
2006 (1)

CHEBI ID

CHEBI:10020 (1)
CHEBI:1013 (1)
CHEBI:1017 (1)
CHEBI:10242 (1)
CHEBI:1027 (1)
CHEBI:10284 (1)
CHEBI:1030 (1)
CHEBI:10317 (1)
CHEBI:10366 (1)
CHEBI:10373 (1)
CHEBI:10482 (1)
CHEBI:10539 (1)
CHEBI:10558 (1)
CHEBI:10569 (1)
CHEBI:1058 (1)
CHEBI:10598 (1)
CHEBI:10646 (1)
CHEBI:10647 (1)
CHEBI:10648 (1)
CHEBI:1069 (1)
CHEBI:10719 (1)
CHEBI:10721 (1)
CHEBI:10790 (1)
CHEBI:10860 (1)
CHEBI:1094 (1)
CHEBI:1113 (1)
CHEBI:1122 (1)
CHEBI:1148 (1)
CHEBI:1163 (1)
CHEBI:1179 (1)

Metabolite Name

(+)-gamma-Hydroxy-L-homoarginine (1)
(-)-Camphor (1)
(-)-Jasmonic acid (1)
(-)-erythro-(2R,3R)-dihydroxybutylamide (1)
(24R,24'R)-Fucosterol epoxide (1)
(25S)-11alpha,20,26-trihydroxyecdysone (1)
(2S,3S)-2-Hydroxytridecane-1,2,3-tricarboxylate (1)
(3Z)-Phytochromobilin (1)
(E)-3,7-Dimethylocta-1,6-diene-3,8-diol (1)
(E)-Glutaconate (1)
(R)-2,3-Dihydroxy-3-methylpentanoate (1)
(R)-2-Hydroxyglutarate (1)
(R)-3-Amino-2-methylpropanoate (1)
(R)-3-Hydroxybutanoate (1)
(R)-4'-Phosphopantothenoyl-L-cysteine (1)
(S)-1-Pyrroline-5-carboxylate (1)
(S)-2-Acetolactate (1)
(S)-3-Hydroxyisobutyrate (1)
(S)-3-Methyl-2-oxopentanoic acid (1)
(S)-Lactate (1)
(S)-Malate (1)
(Z)-4-Hydroxyphenylacetaldehyde-oxime (1)
1(2H)-Isoquinolinone (1)
1,6,6-Trimethyl-2,7-dioxabicyclo[3.2.2]nonan-3-one (1)
1,8-Diazacyclotetradecane-2,9-dione (1)
1-(3,4-dimethoxylphenyl)ethane-1,2-diol (1)
1-(4-amino-2-methylpyrimid-5-ylmethyl)-3-(β-hydroxyethyl)-2-methylpyridinium bromide (1)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (1)
1-Pyrroline-2-carboxylate (1)
1-Pyrroline-4-hydroxy-2-carboxylate (1)

First Public Date

2017 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (42)
RNA-seq of coding RNA (13)
ChIP-seq (8)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
4C (1)
Hi-C (1)
Other (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (221)
2021 (200)
2025 (177)
2023 (161)
2024 (151)
2020 (141)
2019 (119)
2015 (107)
2016 (102)
2018 (100)
2017 (91)
2014 (78)
2012 (72)
2013 (62)
2011 (47)
2008 (40)
2010 (37)
2009 (33)
2026 (27)
2007 (19)
2006 (9)
2003 (6)
2000 (5)
2005 (4)
2001 (3)
2004 (2)
2002 (2)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (5)
WEHI (5)
Vice Dean, Faculty of Medical and Human Sciences Section Lead, Infrastructure and Technology, Manchester Academic Health Science Centre University of Manchester Wolfson Molecular Imaging Centre Manchester M20 3LJ (4)
The Walter and Eliza Hall Institute (3)
Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Department of Obsetrics and Gynecology, The University of Melbourne (2)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (2)
Melbourne Veterinary School, Faculty of Science, The University of Melbourne, Parkville, Victoria, Australia (2)
Professor Department of Molecular and Experimental Medicine The Scripps Research Institute 10550 North Torrey Pines Road La Jolla, CA 92037 (2)
The University of Melbourne (2)
Bio21 Mass Spectrometry and Proteomics Facility, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Bio21 Mass Spectrometry and Proteomics Facility, The University of Melbourne, Parkville, Victoria 3052, Australia (1)
Bio21 Molecular Science and Biotechnology Institute,Department of Biochemistry and Pharmacology, University of Melbourne (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge, CB2 0XY, UK. (1)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (1)
Cambridge Institute for Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, UK (1)
Cambridge Institute for Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Department of Medicine, University of Cambridge, Cambridge, CB2 0AW, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Univeristy of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Unveristy of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Diseases, Department of Medicine, University of Cambridge, (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Cell and Developmental Biology, School of Life Sciences, University of Dundee, DD1 4HN (1)
Centre For Eye Research Australia(CERA) (1)
Dana-Farber Cancer Institute Harvard Medical School Broad Institute Howard Hughes Medical Institute (1)

Tags

xref:PubMed:29048427 (1)

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Protein kinase C-beta regulates environment mediated drug resistance in B cell malignancies

Environment-mediated drug resistance (EMDR) limits the efficacy of cancer therapies by providing anti-apoptotic signals from a non-malignant microenvironment to tumour cells. We show that EMDR is regulated by protein kinase C in stromal cells is required for EMDR. We used plasma membrane profiling t...

ORGANISM(S): Mus musculus (Mouse)

2021-09-08 | PXD011062 | Pride

The complete mitochondrial genome of Hine's emerald dragonfly (Somatochlora hineana Williamson) via NGS sequencing.

Not available

S-EPMC7799857 | biostudies-literature

Panels of HIV-1 Subtype C Env Reference Strains for Standardized Neutralization Assessments.

Not available

S-EPMC5599761 | biostudies-literature

Generation and evaluation of clade C simian-human immunodeficiency virus challenge stocks.

Not available

S-EPMC4338880 | biostudies-literature

Subtype C gp140 Vaccine Boosts Immune Responses Primed by the South African AIDS Vaccine Initiative DNA-C2 and MVA-C HIV Vaccines after More than a 2-Year Gap.

Not available

S-EPMC4895009 | biostudies-literature

Promoter capture Hi-C of human SGBS (Simpson-Golabi-Behmel syndrome preadipocyte) cells and iPSC-derived hypothalamic cells

To identify distal chromatin contacts between promoters and their putative regulatory elements in SGBS preadipocytes and hypothalamic arcuate-like neurons derived from iPSC, we performed Hi-C with a capture step to enrich the library for contacts involving promoters. Hi-C with a capture step was per...

ORGANISM(S): Homo sapiens

2021-03-20 | E-MTAB-10200 | biostudies-arrayexpress

Integrating genomics and multi‐platform metabolomics enables metabolite QTL detection in breeding‐relevant apple germplasm

Apple (Malus × domestica) has commercial and nutritional value, but breeding constraints of tree crops limit varietal improvement. Marker-assisted selection minimizes these drawbacks, but breeders lack applications for targeting fruit phytochemicals. To understand genotype-phytochemical associations...

2021-09-21 | MTBLS2327 | MetaboLights

VEGF and c-Met blockade amplify angiogenesis inhibition in pancreatic islet cancer.

Not available

S-EPMC3138890 | biostudies-literature

Microwave-Assisted Synthesis of Pt/SnO₂ for the Catalytic Reduction of 4-Nitrophenol to 4-Aminophenol.

Not available

S-EPMC10489642 | biostudies-literature

SCOPE 4 proteomics - Dual targeting of p53 and c-MYC selectively eliminates leukaemic stem cells

BaF3 were transfected with Jak2 V617F, Jak2 K539L or Mpl W515L, shotgun proteomic analysis with iTRAQ was performed

ORGANISM(S): Mus musculus (Mouse)

2016-05-26 | PXD002782 | Pride

Baf3 cell line transfected with a variety oncogenic linked mutations

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2149 Results

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