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TranscriptomicsTranscription profiling by array of condition dependent regulation of lipid metabolism in Saccharomyces cerevisiae
Investigation of lipid metabolism as a function of three experimental factors: 1) aerobicity (aerobic vs anaerobic, or 'A' vs 'O'), 2) nutrient limitation (carbon vs nitrogen limitation, or 'C' vs 'N'), 3) temperature (30C vs 15C, or 'T' vs 't') using a full factorial design.
ORGANISM(S): Saccharomyces cerevisiae 
2013-01-31 | E-MEXP-3704 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae single transcription factor deletions
Study expression effects of single transcription factor deletions.
ORGANISM(S): Saccharomyces cerevisiae 
2005-06-05 | E-MEXP-351 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Streptomyces coelicolor actinorhodin-producing wild type andrecombinant strains
Genome-wide expression analysis of 6 batch cultivations of actinorhodin-producing wild type and recombinant strain of Streptomyces coelicolor
ORGANISM(S): Streptomyces coelicolor A3(2) 
2010-05-25 | E-MTAB-306 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of transcription factor binding in yeast cells perturbed with methyl-methanesulfonate
Genome-wide promoter-binding analysis of transcription factors in S.cerevisiae cells perturbed with 0.03% methyl-methanesulfonate for 60 minutes
ORGANISM(S): Saccharomyces cerevisiae 
2006-05-19 | E-TABM-92 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast grown in a three-factor design to study the relationship between specific growth rate and genome-wide gene expression
A three-factor design was applied to study the relationship between specific growth rate and genome-wide gene expression in 36 steady-state chemostat cultures of Saccharomyces cerevisiae.
ORGANISM(S): Saccharomyces cerevisiae 
2009-01-15 | E-MTAB-78 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of yeast transcription factor deletion strains perturbed with methyl-methanesulfonate
Gene expression profiles of transcription factor deletion strains (S.cerevisiae) perturbed with 0.03% methyl-methanesulfonate for 60 minutes
ORGANISM(S): Saccharomyces cerevisiae 
2006-05-19 | E-TABM-93 | biostudies-arrayexpress
TranscriptomicsAnalysis of copy number variations among diverse cattle breeds
Genomic structural variation is an important and abundant source of genetic and phenotypic variation. Here we describe the first systematic and genome-wide analysis of copy number variations (CNVs) in modern domesticated cattle using array comparative genomic hybridization (array CGH), quantitative ...
ORGANISM(S): Bos taurus 
2010-03-02 | E-GEOD-19866 | biostudies-arrayexpress
TranscriptomicsExperimental systems biology: Lessons from an integrated, multi-laboratory study in yeast
We undertook an inter-laboratory effort to generate high-quality quantitative data for a very large number of cellular components in yeast using transcriptome and metabolome analysis. We ensured the high-quality of the experimental data by evaluating a wide range of sampling and measurement techniqu...
ORGANISM(S): Saccharomyces cerevisiae 
2010-12-01 | E-GEOD-24234 | biostudies-arrayexpress
ProteomicsMudPIT analyses of the proteins co-purified with Ada2b-PB-FLAG-HA FLAG-affinity purified from Drosophila melanogaster S2 cells
Protein Complexes Purification- Stable S2 cell lines expressing Ada2b (isoform B; NP_001027151.1) in the pRmHa3-CHA2FL2 (Ada2b-PBH2F2) were maintained at 1-2 e6 cells/mL in SFX medium (HyQ SFX-Insect). Cells stably transfected with empty vector served as negative controls. Protein complexes containi...
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) 
2018-11-20 | MSV000083153 | MassIVE
TranscriptomicsGene expression analysis of Pseudomonas putida KT2440 Wild Type and its exopolysaccharide mutants under water stress
Alginate, a major exopolysaccharide (EPS) produced by P. putida, is known to create hydrated environments and alleviate the effect of water limitation. In addition to alginate, P. putida is capable of producing cellulose (bcs), putida exopolysaccharide a (pea), and putida exopolysaccharide b (peb). ...
ORGANISM(S): Pseudomonas putida KT2440 
2013-12-23 | E-GEOD-53407 | biostudies-arrayexpress
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