Wu Shen S - OmicsDI

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Unknown (3690)
Proteomics (112)
Transcriptomics (55)
Metabolomics (20)
Genomics (4)
Multiomics (3)

Organisms

Allexis (78)
Arabidopsis thaliana (78)
Callinectes sapidus (78)
Danio rerio (78)
Drosophila (78)
Drosophila melanogaster (78)
Entamoeba histolytica (78)
Entamoeba histolytica HM-1:IMSS-A (78)
Escherichia coli (78)
Leishmania major strain Friedlin (78)
Listeria monocytogenes (78)
Medicago truncatula (78)
Methylohalobius crimeensis 10Ki (78)
Mus musculus (78)
Homo sapiens (39)
Mus musculus (23)
Oryza sativa (3)
Drosophila melanogaster (3)
Rattus norvegicus (3)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)
Drosophila simulans (2)
Campylobacter jejuni (2)
Saccharomyces cerevisiae (2)
Arabidopsis thaliana (2)
uncultured bacterium (1)
Oryza sp. (1)
Oryza sativa Japonica Group (1)
Sus scrofa (1)
Schistosoma japonicum (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Repository

pride (78)
biostudies-arrayexpress (58)
iProX (26)
MetaboLights (20)
MassIVE (5)
PeptideAtlas (3)
EGA (1)

Tissue

Cell culture (14)
Liver (8)
Cell suspension culture (4)
Testis (4)
Others (3)
Ovary (3)
Brain (2)
Cell line cell (2)
Chondrocyte (2)
Kidney (2)
Oocyte (2)
Prokaryotic cell (2)
Sperm (2)
White adipocyte (2)
Brown adipocyte (1)
Early embryonic cell (1)
Epithelial cell (1)
Esophagus (1)
HeLa cell (1)
Heart (1)
Hepatocyte (1)
Leaf (1)
Lung (1)
Neuron (1)
Pancreas (1)
Permanent cell line cell (1)
Seedling (1)
Sensory ganglion (1)
Spleen (1)
Stem cell (1)

Disease

Disease free (3)
Malignant neoplasm of ovary (2)
Acute leukemia (1)
Alopecia (1)
Amyloidosis (1)
Breast cancer (1)
Cervix carcinoma (1)
Esophageal cancer (1)
Lipid metabolism disorder (1)
Medullary thyroid carcinoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Neuropathic pain (1)
Osteoporosis (1)
Osteosarcoma (1)
Ovarian cancer (1)
Polycystic kidney disease (1)
Polycystic ovary syndrome (1)

Technology Type

Mass Spectrometry (78)
Shotgun proteomics (38)
Mass spectrometry (19)
Bottom-up proteomics (14)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (9)
Data-independent acquisition (7)
Gel-based experiment (6)
SWATH MS (4)
SRM/MRM (3)
Immunopeptidomics (2)
Mass spectrometry assay (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
LTQ Orbitrap Elite (2)
Illumina Genome Analyzer II (1)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
TripleTOF 6600 (1)
Liquid Chromatography MS -neg - hilic (1)
Liquid Chromatography MS – pos - hilic (1)
Agilent 7890 (1)
Liquid Chromatography MS - (1)
MS Imaging - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Gas Chromatography MS - positive (1)
QExactive (1)

Publication Date

2024 (24)
2023 (23)
2022 (23)
2025 (19)
2013 (18)
2014 (13)
2020 (12)
2021 (10)
2026 (9)
2016 (7)
2015 (7)
2010 (7)
2018 (6)
2019 (4)
2012 (3)
2011 (2)
2017 (2)
2005 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:16704 (10)
CHEBI:16040 (10)
CHEBI:16919 (10)
CHEBI:17748 (9)
CHEBI:17568 (9)
CHEBI:7916 (9)
CHEBI:17154 (9)
CHEBI:17351 (9)
CHEBI:17509 (8)
CHEBI:16335 (8)
CHEBI:17368 (8)
CHEBI:30769 (8)
CHEBI:17256 (7)
CHEBI:30746 (7)
CHEBI:17750 (7)
CHEBI:15891 (7)
CHEBI:17821 (7)
CHEBI:27248 (7)
CHEBI:17015 (7)
CHEBI:18300 (7)
CHEBI:16750 (7)
CHEBI:16235 (7)
CHEBI:30915 (7)
CHEBI:15756 (7)
CHEBI:18344 (7)
CHEBI:46961 (6)
CHEBI:27781 (6)
CHEBI:28997 (6)
CHEBI:30805 (6)
CHEBI:17822 (6)

Metabolite Name

Guanosine (6)
Hypoxanthine (6)
L-Arginine (5)
Adenosine (5)
Riboflavin (5)
Uridine (5)
N-(5-Methyl-3-oxohexyl)alanine (4)
Methylsuccinic acid (4)
Uracil (4)
Kynurenic acid (4)
Benzoic acid (4)
L-Palmitoylcarnitine (4)
Taurine (4)
Citraconic acid (4)
Cholic acid (4)
L-Proline (4)
Citric acid (4)
Urocanic acid (4)
Cytosine (4)
Adenine (4)
Cytidine (4)
Thymidine (4)
Creatinine (4)
Creatine (4)
L-Carnitine (4)
L-Phenylalanine (4)
Geniposidic acid (3)
Bergaptol (3)
Adrenochrome (3)
4-Hydroxycinnamic acid (3)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (14)
Other (3)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
ChIP-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (561)
2022 (488)
2023 (422)
2024 (417)
2021 (412)
2020 (282)
2018 (206)
2019 (187)
2017 (149)
2016 (121)
2015 (112)
2013 (81)
2026 (77)
2014 (75)
2012 (57)
2011 (34)
2010 (29)
2009 (12)
2008 (8)
2007 (5)
2006 (4)
2005 (3)
2004 (3)
2003 (1)
2002 (1)
2001 (1)

Lab affiliation

Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (4)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Northwest University (3)
Clinical Reaseach center for Reproduction and Genetics in Hunan Province, Reproductive and Genetic Hospital of CITIC-XIANGYA, Changsha, Hunan, China (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Center for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
SIMM (2)
University of Science and Technology of China (2)
Wenzhou Medical University (2)
Zhejiang University (2)
1. Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 8A Biomedical Grove, Immunos, Singapore 138648, Republic of Singapore 2. Department of Pharmacy, National University of Singapore 3. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, the Netherlands (1)
Academia Sinica Institute of Biological Chemistry(IBC), Dr. Shih-Hsiung Wu's lab, Taipei, Taiwan (R.O.C.) (1)
Amgen (1)
BGI-Shenzhen,China (1)
Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Singapore Immunology Network (SIgN), Agency for Science, Technology and Research (A*STAR), 138648 Singapore, Singapore. Department of Pharmacy, National University of Singapore, 117543, Singapore, Singapore. (1)
Center for Biologics Evaluation and Research, U.S. Food and Drug Administration (1)
College of Life Science, Northwest University (1)
College of Veterinary Medicine, Shaanxi Centre of Stem Cells Engineering & Technology, Northwest A&F University, Yangling, Shaanxi, 712100, China (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (1)
Department of Biochemistry, Albert Einstein College of Medicine (1)
Department of Cancer Biology, Dana-Farber Cancer Institute Department of Cell Biology, Harvard Medical School (1)
Department of Cardiology, the First Affiliated Hospital, Wenzhou Medical University, Wenzhou, Zhejiang 325035, China (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Department of Imaging intervention, Tongren Hospital, Shanghai Jiao Tong University School of Medicine, No.1111 Xianxia Road, Changning District, Shanghai, 200336, China. (1)
Department of Molecular & Integrative Physiology,University of Michigan Medical School, 5325 Brehm Tower, 1000 Wall St., Ann Arbor, MI, 48105 (1)
Department of Neurology, Mental and Neurological Disease Research Center, the Third Affiliated Hospital of Sun Yat-sen University (1)
Department of Obstetrics/Gynecology, Joint Laboratory of Reproductive Medicine (SCU-CUHK), Key Laboratory of Obstetric, Gynecologic and Pediatric Diseases and Birth Defects of Ministry of Education, West China Second University Hospital, Sichuan University, Chengdu 610041, China. (1)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China (1)

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INO80-regulated genes in S-phase after MMS treatment

This is transcription analysis of genes regulated by the INO80 chromatin remodeling complex in S-phase of the cell cycle after MMS treatment. Wildtype and ino80 mutant cells were first synchronized at G1 using alpha-factor, the cells were released in to S-phase in the presence of 0.02% MMS. After 45...

ORGANISM(S): Saccharomyces cerevisiae

2010-06-20 | E-GEOD-18555 | biostudies-arrayexpress

Mouse Liver S-Palmitoylation ZDHHC13 LC-MS/MS

Protein S-palmitoylation is a reversible post-translational modification which adding 16-carbon palmitate to specific cysteines and contributes to variable biological functions such as protein trafficking, scaffolding and signaling. ZDHHC13 is one of the members of DHHC-containing palmitoyl-acyltran...

ORGANISM(S): Mus musculus (Mouse)

2017-09-29 | PXD003039 | Pride

Phase II Study of Hemithoracic Intensity-Modulated Pleural Radiation Therapy (IMPRINT) As Part of Lung-Sparing Multimodality Therapy in Patients With Malignant Pleural Mesothelioma.

Not available

S-EPMC5019761 | biostudies-literature

Chinese Herbal Complex 'Bu Shen Jie Du Fang' (BSJDF) Modulated Autophagy in an MPP⁺-Induced Cell Model of Parkinson's Disease.

Not available

S-EPMC6436328 | biostudies-literature

Phylogenetic diversity and morphological characterization of cordycipitaceous species in Taiwan.

Not available

S-EPMC11663429 | biostudies-literature

Effectiveness of Yi-Zhi-An-Shen granules on cognition and sleep quality in older adults with amnestic mild cognitive impairment: protocol for a randomized, double-blind, placebo-controlled trial.

Not available

S-EPMC6701140 | biostudies-literature

Is There an Association Between Hypothyroidism and Sexual Dysfunction: A Systematic Review and Cumulative Analysis.

Not available

S-EPMC8240328 | biostudies-literature

Investigation of the Potential Mechanism Governing the Effect of the Shen Zhu San on COVID-19 by Network Pharmacology.

Not available

S-EPMC7669347 | biostudies-literature

S-nitrosocysteine proteomics of Schistosoma japonicum collected from infected mice and rats

Rats and mice were infected with Schistosoma japonicum, and the worms were collected from infected rats and mice. Worms in rats were exposed to high level of NO, while the worms in mice were not. Then a S-nitrosocysteine proteomics of Schistosoma japonicum collected from infected rats and mice was p...

ORGANISM(S): Schistosoma Japonicum

2024-04-19 | PXD041667 |

Jian-Pi-Yi-Shen formula alleviates renal fibrosis by restoring NAD+ biosynthesis in vivo and in vitro.

Not available

S-EPMC10817388 | biostudies-literature

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3881 Results

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Organisms

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Disease

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Instrument Platform

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UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

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Lab affiliation

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