Xiong Tian T - OmicsDI

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Unknown (221)
Proteomics (25)
Metabolomics (3)
Transcriptomics (2)

Organisms

Homo sapiens (15)
Mus musculus (2)
Chlamydomonas reinhardtii (2)
Neurospora crassa OR74A (1)
Tetrahymena thermophila (1)
Mus (1)
Oryctolagus cuniculus (1)
Mycobacterium tuberculosis H37Ra (1)
Phaeodactylum tricornutum CCAP 1055/1 (1)

Repository

PeptideAtlas (11)
pride (7)
iProX (5)
MetaboLights (3)
biostudies-arrayexpress (2)
MassIVE (2)

Tissue

Plasma Non-glyco (11)
Blood serum (1)
Brain (1)
Cell culture (1)
Neuron (1)
Sensory ganglion (1)

Disease

Neuropathic pain (1)

Technology Type

Mass Spectrometry (7)
Shotgun proteomics (5)
Mass spectrometry (2)
Mass spectrometry assay (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)

Instrument Platform

LTQ Orbitrap Velos (12)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (2)
Q Exactive (1)

Publication Date

2015 (12)
2022 (5)
2024 (4)
2012 (2)
2026 (2)
2019 (1)
2017 (1)
2025 (1)
2021 (1)
2016 (1)

UNIPROT ID/AC

A0A024RC46 (11)
A5A3E0 (11)
A6NNZ2 (11)
B3KML9 (11)
B4DHB3 (11)
B4DL86 (11)
B4DRV9 (11)
B4DY08 (11)
B4E3A4 (11)
C9JM50 (11)
E7EX29 (11)
G8JLB6 (11)
H0YM50 (11)
H7BZ94 (11)
I3L4N8 (11)
J3KPS3 (11)
J3QRK5 (11)
M0QZ52 (11)
O00299 (11)
O14556 (11)
O14818 (11)
O60812 (11)
O75369 (11)
O75369-8 (11)
O75694 (11)
O76013 (11)
O76015 (11)
O95678 (11)
P00338 (11)
P00338-3 (11)

ENSEMBL ID

ENSG00000170477 (11)
ENSG00000147251 (4)

CHEBI ID

CHEBI:64563 (2)
CHEBI:72388 (2)
CHEBI:100246 (1)
CHEBI:10043 (1)
CHEBI:10073 (1)
CHEBI:10136 (1)
CHEBI:10275 (1)
CHEBI:10575 (1)
CHEBI:113535 (1)
CHEBI:116314 (1)
CHEBI:12777 (1)
CHEBI:131427 (1)
CHEBI:131428 (1)
CHEBI:131430 (1)
CHEBI:131439 (1)
CHEBI:131440 (1)
CHEBI:131775 (1)
CHEBI:131993 (1)
CHEBI:132050 (1)
CHEBI:132121 (1)
CHEBI:132244 (1)
CHEBI:132403 (1)
CHEBI:132477 (1)
CHEBI:132479 (1)
CHEBI:132502 (1)
CHEBI:132538 (1)
CHEBI:132539 (1)
CHEBI:132542 (1)
CHEBI:132543 (1)
CHEBI:132544 (1)

Metabolite Name

(+)-ar-Turmerone (1)
(+/-)-CP 47,497-C7-Hydroxy metabolite (1)
(+/-)-Equol (1)
(+/-)17(18)-EpETE methyl ester (1)
(+/-)5(6)-EET Ethanolamide (1)
(-)-Caryophyllene oxide (1)
(-)-Epigallocatechin (1)
(11E,15Z)-9,10,13-trihydroxyoctadeca-11,15-dienoic acid (1)
(12Z)-9,10,11-trihydroxyoctadec-12-enoic acid (1)
(1E)-5-hydroxy-1,7-diphenylhept-1-en-3-one (1)
(1E,4E)-1,5-bis(4-methoxyphenyl)penta-1,4-dien-3-one (1)
(1R,2R)-trans-N-Boc-1,2-cyclohexanediamine (1)
(2-butyl-1H-imidazol-4-yl)methanol (1)
(2E)-3-(3,4-dimethoxyphenyl)prop-2-enoic acid (1)
(2E)-6-hydroxy-2-methyl-6-(4-methylphenyl)hept-2-enoic acid (1)
(2E,4E)-N-(2-methylpropyl)deca-2,4-dienamide (1)
(2E,4E)-N-(2-methylpropyl)dodeca-2,4-dienamide (1)
(2E,4E)-N-[2-(4-hydroxyphenyl)ethyl]dodeca-2,4-dienamide (1)
(2R)-2-[(2R,5S)-5-[(2S)-2-hydroxybutyl]oxolan-2-yl]propanoic acid (1)
(2R)-5-hydroxy-7-methoxy-2-phenyl-3,4-dihydro-2H-1-benzopyran-4-one (1)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (1)
(2S)-2-(2-hydroxypropan-2-yl)-2H,3H,7H-furo[3,2-g]chromen-7-one (1)
(3S,9aS)-3-benzyl-octahydro-1H-pyrido[1,2-a]pyrazin-1-one (1)
(3beta,9xi)-3-(beta-D-Glucopyranosyloxy)-14-hydroxycard-20(22)-enolide (1)
(4E)-1,7-bis(3,4-dihydroxyphenyl)hept-4-en-3-one (1)
(5-L-Glutamyl)-L-Amino Acid (1)
(5E)-7-methylidene-10-oxo-4-(propan-2-yl)undec-5-enoic acid (1)
(5epsilon,9epsilon,16epsilon)-17-Hydroxykauran-19-oic acid (1)
(6E)-7-(2H-1,3-benzodioxol-5-yl)-1-(piperidin-1-yl)hept-6-en-1-one (1)
(R)-Prunasin (1)

Study type

RNA-seq of coding RNA (2)

Release Date

2025 (42)
2022 (31)
2023 (28)
2024 (25)
2021 (24)
2020 (19)
2019 (9)
2018 (9)
2014 (8)
2017 (7)
2012 (5)
2026 (5)
2016 (5)
2015 (4)
2013 (2)

Lab affiliation

Westlake University, Hangzhou,Zhejiang,CHINA (2)
Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, National Key Laboratory of Medical Molecular Biology & Department of Immunology, No 5 Dongdan Santiao, Dongcheng district, Beijing 100005, China (1)
Secretary General of CNHUPO Professor, Director Department of Genomics and Proteomics, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine， 33 Life Science Park Road, Beijing 102206, P.R. China. Tel 0086-10-80727777 EXT 1314 (1)
State Key Laboratory of Respiratory Disease, Institute of Drug Discovery, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences (1)
Tongji University (1)
Westlake University, Hangzhou, Zhejiang, CHINA (1)

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RNA-seq analysis of Tetrahymena thermophila

We present a comprehensive transcriptome of ciliate T. thermophila using the Illumina RNA-seq platform. The data was generated from the six mRNA samples of growth, starvation and conjugation of Tetrahymena. Despite an AT rich genome, there are about 124.6 million reads mapped to T. thermophila genom...

ORGANISM(S): Tetrahymena thermophila

2012-03-15 | E-GEOD-27971 | biostudies-arrayexpress

Phosphoproteomic and Metabolomic Profiling Uncovers the Roles of CcPmk1 in the Pathogenicity of Cytospora chrysosperma

Pmk1, a highly conserved pathogenicity-related mitogen-activated protein kinase (MAPK) in pathogenic fungi, is phosphorylated and activated by MAP2K and acts as a global regulator of fungal infection and invasive growth by modulating downstream targets. However, the hierarchical CcPmk1 regulatory...

2022-07-11 | MTBLS4463 | MetaboLights

scRNA-seq of gastric tumor shows complex intercellular interaction with an alternative T cell exhaustion trajectory.

Not available

S-EPMC9399107 | biostudies-literature

Metal-organic nanostructures based on sono/chemo-nanodynamic synergy of TixOy/Ru reaction units: for ultrasound-induced dynamic cancer therapy.

Not available

S-EPMC12281788 | biostudies-literature

Targeting PD-1 and CD85j can restore intratumoral CD4+ GzmB+ T-cell functions to combat MHC-II-expressing tumors.

Not available

S-EPMC11962805 | biostudies-literature

Systemic administration of mesenchymal stem cells loaded with a novel oncolytic adenovirus carrying a bispecific T cell engager against hepatocellular carcinoma.

Not available