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ProteomicsRice-xoo interaction phosphoproteome LC-MSMS
A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight at 0h and 24h after xoo infection
ORGANISM(S): Oryza sativa (Rice) 
2015-06-29 | PXD002222 | Pride
Lc-msms Phosphoproteome Xoo Rice 
TranscriptomicsNext Generation Sequencing Facilitates Small RNA Mediated Rice Resistance to Xoo
Purpose: The goal of this study is to identify small non-conding RNAs which are involved in rice resistance to Xoo. Methods: Rice leaves were inoculated with the Xoo strain PXO61 at the four-leaf to five-leaf stage by the leaf-clipping method. Control rice plants were inoculated with water (mock ino...
ORGANISM(S): Oryza sativa Japonica Group 
2016-02-25 | E-GEOD-69242 | biostudies-arrayexpress
TranscriptomicsExpression data in response to Xoo. bacterial infection in rice
In response to bacterial infection, early transcriptional re-programming occurs in the host plant. We used microarrays to analyse the global transcriptomic response to Xoo. infection in a resistant rice cultivar (IR24). This was analysed in parallel with microarrays examining Xoo infection in a susc...
ORGANISM(S): Oryza sativa 
2013-02-20 | E-GEOD-43050 | biostudies-arrayexpress
Transcriptomicsaffy_xoo_rice-Transcriptomics-based identification of Xoo strain BAI3 Talc targets in rice
affy_xoo_rice - affy_xoo_rice - The Bacterial Leaf Blight disease of rice is due to Xanthomonas oryzae pv. oryzae. As for many pathogenic bacteria, it relies on a type 3 secretion system that is devoted to the injection of type 3 effectors into the eukaryotic host cell. These proteins are meant to s...
ORGANISM(S): Oryza sativa 
2010-12-01 | E-GEOD-19844 | biostudies-arrayexpress
GenomicsTranscriptome of Xoo BXO43 and XopQ-
Transcriptome of Xoo BXO43 and XopQ-
PRJNA741985 | ENA
ProteomicsTime-resolved combined analysis of transcriptome and proteome of the pathogenicity-activated plant pathogen Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae (Xoo) is a rice pathogen causing bacterial blight, which outbreaks in most rice cultivating countries and reduces yield up to 50% due to no effective pesticide. Urgent responses of Xoo upon the initial contacts with rice at infection site are essential for pathogenesis....
ORGANISM(S): Xanthomonas oryzae pv. oryzae KACC 10331 
2021-09-09 | PXD020135 | Pride
Transcriptome Time-resolved gene expression Xoo–rice interactions Pathogenicity Proteome Xanthomonas oryzae pv. oryzae 
TranscriptomicsGene expression changes induced in Rice (Oryza sativa) leaves following treatment with any one of the following: wild type Xoo, lipopolysaccharide (LPS) and exopolysaccaride (EPS) deficient Xoo mutant; LPS proficient but EPS deficient Xoo mutant
Lipopolysaccharide is a Microbe Associated Molecular Pattern (MAMP) that is known to induce defense responses in plants. In rice we have shown that Xoo LPS induce callose deposition, reactive oxygen production and induced resistance response. The exopolysaccaride (EPS) secreted by Xoo might be invol...
ORGANISM(S): Oryza sativa 
2015-06-30 | E-GEOD-61833 | biostudies-arrayexpress
Transcriptomicsaffy_riz_2011_7-: Transcriptomic analysis of rice leaves challenged with virulent and avirulent Xoo strains
affy_riz_2011_7 - affy_riz_2011_7 - The Bacterial Leaf Blight disease of rice is due to Xanthomonas oryzae pv. oryzae. As for many pathogenic bacteria, it relies on a type 3 secretion system (TTSS) that is devoted to the injection of type 3 effectors (T3Es) into the eukaryotic host cell. These prote...
ORGANISM(S): Oryza sativa 
2012-10-15 | E-GEOD-34192 | biostudies-arrayexpress
TranscriptomicsTime-resolved genome-wide pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae (Xoo) via RNA-Seq
Host-pathogen interactions, in particular during the early stages of infection, are important for the fate of both the invading pathogen and host. In pathogens, these interactions activate diverse pathogenic signals to cause disease in the host and evade the inevitably activated immune responses of ...
ORGANISM(S): Xanthomonas oryzae pv. oryzae KACC10331 
2015-09-22 | E-GEOD-61607 | biostudies-arrayexpress
ProteomicsComparative Proteome Profiling of Susceptible anComparative Proteome Profiling of Susceptible and Resistant Rice Cultivars Identified an Arginase Involved in Rice Defense Against Xanthomonas oryzae pv. oryzae d Resistant Rice Cultivars Identified an Arginase Involved in Rice Defense Against Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae (Xoo), the causative agent of bacterial blight disease, is one of the major threats to rice productivity. Yet, the molecular mechanism of rice-Xoo interaction is elusive. Here, we report comparative proteome profiles of Xoo susceptible (Dongjin) and resistant (Hwayeong)...
ORGANISM(S): Oryza sativa subsp. japonica (Rice) 
2022-01-06 | PXD027569 | Pride
Proteomics Low-abundance proteins Bacterial blight disease Rice Arginase 
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