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Proteomics4D Smart DIA Quantitative Proteomic Analysis of Lysosomal Fractions Isolated from ASFV-Infected PAMs Following Bacterial Challenge
This study performs 4D Smart DIA quantitative proteomic analysis on lysosomal fractions isolated from porcine alveolar macrophages (PAMs) that were first infected with African swine fever virus (ASFV) and then subjected to bacterial challenge. Lysosomal extraction was carried out at 6 h post‑bacteri...
ORGANISM(S): Sus scrofa domesticus (domestic pig) 
2026-09-03 | PXD082798 | Pride
Pig  african swine fever virus (asfv)  porcine alveolar macrophages (pams)  lysosome  4d smartdia proteomics 
ProteomicsCN-CHPP 2015 Testis Project - Tissue-Based Proteogenomics Reveals that Human Testis Endows Plentiful Missing Proteins
The testis tissue-based trans-omics was a feasible approach to find more missing proteins (MPs) because it was reported higher gene expression found in testis tissues. Three testis tissues and two protein separation strategies were selected to quantitatively evaluate gene expression abundance at the...
ORGANISM(S): Homo sapiens (Human) 
2015-11-03 | PXD002179 | Pride
Transcriptome Testis Chromosome-centric human proteome project Proteome Missing proteins 
TranscriptomicsExpression data from a Tbx1 gene allelic series
This study was aimed at identifying Tbx1 dosage-dependent genes in vivo, so we performed a transcriptome analysis of Tbx1 mutants with nine different genotypes corresponding to different Tbx1 mRNA dosages. RNA isolated from whole E9.5 embryos with 9 different genotypes was hibridized to Affymetrix G...
ORGANISM(S): Mus musculus 
2012-04-03 | E-GEOD-33064 | biostudies-arrayexpress
ProteomicsProteome-Wide Analyses Reveal Diverse Functions of Acylation Proteins in Neurospora crassa
Quantitative acetyl-proteomics, a newly identified post-translational modification, is known to regulate transcriptional activity in different organisms. Neurospora crassa is a model ascomycete fungus maintained for biochemistry and molecular biology research; however, extensive studies of the funct...
ORGANISM(S): Neurospora crassa 
2021-01-26 | PXD022001 | Pride
Neurospora crassa  quantitative acetyl-proteomics  acetylated proteins  protein-protein interaction 
MetabolomicsComparison of the Metabolic Profiles in the Plasma and Urine Samples Between Autistic and Typically Developing Boys: A Preliminary Study
Background: Autism spectrum disorder (ASD) is defined as a pervasive developmental disorder which is caused by genetic and environmental risk factors. Besides the core behavioral symptoms, accumulated results indicate children with ASD also share some metabolic abnormalities. Objectives:
2022-03-02 | MTBLS2421 | MetaboLights
UnknownA combined hypoxia and immune gene signature for predicting survival and risk stratification in triple-negative breast cancer.
Not available
S-EPMC8386525 | biostudies-literature
MetabolomicsLactobacillus plantarum MR1 alleviates high-carbohydrate diet-induced oxidative stress and liver lipid deposition via upregulating uridine synthesis
The overconsumption of carbohydrates induces oxidative stress and lipid accumulation in the liver, which can be alleviated by modulation of intestinal microbiota; however, the underlying mechanism remains unclear. Here, we demonstrated that a strain affiliated with Lactobacillus plantarum (de...
2024-01-16 | MTBLS4262 | MetaboLights
ProteomicsCN-CHPP 2015 Testis Project
The testis tissue-based trans-omics was a feasible approach to find more missing proteins (MPs) because it was reported higher gene expression found in testis tissues. Three testis tissues and two protein separation strategies were selected to quantitatively evaluate gene expression abundance at the...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-06-26 | MSV000082510 | MassIVE
UnknownGenome sequencing provides novel insights into diadromous migration adaptations in the roughskin sculpin, <i>Trachidermus fasciatus</i> (Scorpaeniformes, Cottidae).
Not available
S-EPMC12576477 | biostudies-literature
UnknownStacking-ac4C: an ensemble model using mixed features for identifying n4-acetylcytidine in mRNA.
Not available
S-EPMC10716444 | biostudies-literature
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