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TranscriptomicsAspergillus niger WT: Control vs. xylan induction
Transcriptional profiling of the A. niger WT (N402) strain treated with xylan (1%, w/v) for 6, 12 and 24 h. The main objective was to identify genes related to cellulases and hemicellulases after treatment with the polysaccharide xylan. The experiment was further validated by enzymatic assays. Three...
ORGANISM(S): Aspergillus niger 
2010-10-21 | E-GEOD-24848 | biostudies-arrayexpress
TranscriptomicsDeciphering regulatory mechanisms associated with hemicellulose degradation in Neurospora crassa
Hemicellulose, the second most abundant plant biomass fraction after cellulose, is widely viewed as a potential feedstock for the production of liquid fuels and other value-added materials. Degradation of hemicellulose by filamentous fungi requires production of many different enzymes, which are ind...
ORGANISM(S): Neurospora crassa 
2012-03-26 | E-GEOD-34098 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of Bacteroides xylanisolvens XB1AT grown on pectin or xylan
Dietary fiber degradation is a key function of the human gut microbiota. The aim of this study was to increase our knowledge on the degradation of plant cell wall polysaccharide degradation by a prominent human gut bacterial species, Bacteroides xylanisolvens. The transcriptome analysis of B. xylan...
ORGANISM(S): Bacteroides xylanisolvens 
2015-10-28 | E-GEOD-74379 | biostudies-arrayexpress
ProteomicsProteome analysis of Polaribacter sp. Q13 cells cultivated on mixed-linkage (β1,3/1,4-xylan), xylose and glucose
A xylan ulitization locus in Polaribacter sp. Q13, named XUL-Q13, was predicted to be involved in mixed-linkage xylan utilization. To support this, Polaribacter sp. Q13 was cultivated separately in triplicates on mixed-linkage xylan (MX_1, MX_2, MX_3), xylose (X_1, X_2, X_3) and glucose (G_1, G_2, G...
ORGANISM(S): Polaribacter sp. Q13 
2023-12-14 | PXD035342 | Pride
Polaribacter sp. q13 Proteome Mixed-linkage xylan 
ProteomicsXylan utilization by haloarchaea-nanohaloarchaea associations
In hypersaline brines, biodegradation of recalcitrant plant polymers can be inhibited by salt-induced microbial stress and/or caused by inadequate metabolic capabilities of extremely halophilic microbes. Therefore, woody materials can be well-preserved even in NaCl brines that are less biologically ...
ORGANISM(S): Haloferax lucentense Nanohaloarchaea archaeon 
2023-10-24 | PXD036877 | Pride
Haloarchaea Nanohaloarchaea Hypersaline habitats Symbiosis Xylan degradation 
ProteomicsActivity-based protein profiling of xylan-degrading glycoside hydrolases in Aspergillus secretomes
Plant polysaccharides represent a virtually unlimited feedstock for the generation of biofuels and other commodities. However, the extraordinary recalcitrance of plant polysaccharides towards breakdown necessitates a continued search for enzymes that degrade these materials efficiently under defined...
ORGANISM(S): Aspergillus Niger (ncbitaxon:5061) 
2019-04-24 | MSV000083714 | MassIVE
ProteomicsInvestigation of xylan degradation in Thermococcus sp. 2319x1E
Thermococcus sp. 2319x1E is able to grow on different mono- or polysaccharides as carbon source, including xylan. To investigate xylan degradation in Thermococcus sp. 2319x1E, cells were grown on 4 different carbon sources for 12 h (mid-exponential phase) and harvested by centrifugation. Using a lab...
ORGANISM(S): unclassified Thermococcus 
2022-02-17 | PXD026056 | Pride
Abpp Thermococcus sp 2319x1e Fp Fluorophosphonate 
TranscriptomicsTranscriptomic and proteomic analyses of Clostridium termitidis CT1112 during growth on ?-cellulose, xylan, cellobiose and xylose.
High throughput “omics technologies” such as transcriptomics and proteomics provide insights into the metabolic potential of an organism and have been used to understand the genetic and the central carbon metabolism mechanisms for the production of desired end products in various cellulolytic clostr...
ORGANISM(S): [Clostridium] termitidis CT1112 
2015-05-01 | E-GEOD-66125 | biostudies-arrayexpress
TranscriptomicsAspergillus niger WT: Control vs. xylan induction
Transcriptional profiling of the A. niger WT (N402) strain treated with xylan (1%, w/v) for 6, 12 and 24 h. The main objective was to identify genes related to cellulases and hemicellulases after treatment with the polysaccharide xylan. The experiment was further validated by enzymatic assays.
ORGANISM(S): Aspergillus niger 
2010-10-21 | GSE24848 | GEO
ProteomicsTemporal proteome analysis of Clostridium cellulovorans
In order to elucidate the temporal proteome dynamics of C. cellulovorans, we performed quantitative proteome analysis in a different growth phase with five carbon sources (glucose, cellulose, xylan, galactomannan, and pectin).
ORGANISM(S): Clostridium Cellulovorans 743b 
2019-04-22 | PXD010977 | JPOST Repository
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