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TranscriptomicsTranscription profiling of S. cerevisiae xylose metabolism mutants grown on glucose and xylose under aerobic and anaerobic conditions
Response of Saccharomyces cerevisiae engineered for xylose metabolism to changes in carbon source and aeration
ORGANISM(S): Saccharomyces cerevisiae 
2007-07-07 | E-GEOD-835 | biostudies-arrayexpress
TranscriptomicsTranscription profiling Saccharomyces cerevisiae xylose metabolism
In the present study transcriptome and proteome of recombinant, xylose-utilising S. cerevisiae grown in aerobic batch cultures on xylose were compared with glucose-grown cells both in glucose repressed and derepressed states. The aim was to study at genome-wide level how signalling and carbon catabo...
ORGANISM(S): Saccharomyces cerevisiae 
2008-10-26 | E-GEOD-12890 | biostudies-arrayexpress
TranscriptomicsTime course transcriptome of Lactobacillus oligofermentans LMG 22743 during the growth on glucose, ribose and xylose
L. oligofermentans was grown microaerobically on modified (without malic acid, cellulose and bromocresol green) MLD medium (Cavin JF et al., Appl Environ Microbiol 1989), containing either glucose, ribose or xylose as a sole carbon source (50mM) in three replicates. Samples were taken at three time ...
ORGANISM(S): Lactobacillus oligofermentans DSM 15707 = LMG 22743 
2016-08-09 | E-MTAB-4107 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of xylose metabolism in the methylotrophic yeast Hansenula polymopha
The transcriptomes of H. polymorpha grown on xylose were compared with those of glucose-grown cells under both aerobic and microaerobic conditions The transcriptomes of H. polymorpha grown on xylose were compared with those of glucose-grown cells under both aerobic and microaerobic conditions
ORGANISM(S): Ogataea angusta 
2016-07-03 | E-GEOD-43240 | biostudies-arrayexpress
TranscriptomicsComparative xylose metabolism among the ascomycetes C. albicans, S. stipitis and S. cerevisiae
The ascomycetes Saccharomyces cerevisiae, Candida albicans and Scheffersomyces stipitis metabolize the pentose sugar xylose very differently. S. cerevisiae fails to grow on xylose, while C. albicans can grow, and S. stipitis can both grow and ferment xylose to ethanol. However, all three species co...
ORGANISM(S): Candida albicans SC5314 
2013-10-30 | E-GEOD-50476 | biostudies-arrayexpress
TranscriptomicsXylose metabolism in Candida utilis
A recombinant C. utilis strain expressing Candida shehatae xylose reductase K275R/N277D (NADH-preferring), C. shehatae xylitol dehydrogenase and Pichia stipitis xylulokinase produce ethanol from xylose. Here, we report the transcriptional-profiling in the engineered C. utilis strain grown on xylose ...
ORGANISM(S): Cyberlindnera jadinii 
2014-01-01 | E-GEOD-43514 | biostudies-arrayexpress
ProteomicsProteome analysis of xylose metabolism in Rhodotorula toruloides during lipid production 
Our study is the first investigation of proteome of oleaginous yeast Rhotodorula toruloides during conversion of xylose into lipids. We performed comparative proteomics of R. toruloides during cultivation of two carbon sources: glucose and xylose. Proteome analysis revealed significantly lower level...
ORGANISM(S): Rhodotorula toruloides 
2019-08-08 | PXD012332 | Pride
Rhodotorula toruloides Lipid production Proteome Xylose 
TranscriptomicsTranscription profiling of Aspergillus niger wild type and inuR deletion strains grown in sucrose and/or xylose to identify genes that are involved in inulin and sucrose metabolism
Microarray experiments were performed for identifying genes that are involved in inulin and sucrose metabolism by analyzing the transcriptomes of wild type strain N402 and inuR deletion strain grown in sucrose, as well as by analyzing the transcriptomes of wild type strain N402 grown in sucrose and ...
ORGANISM(S): Aspergillus niger 
2008-06-01 | E-TABM-319 | biostudies-arrayexpress
TranscriptomicsAspergillus niger : Control (fructose) vs. xylose + arabinose (XA)
Transcriptional profiling of A. niger comparing different strains (WT, M-NM-^TXlnR, M-NM-^TaraR and M-NM-^TaraRM-NM-^TXlnR) treated with 25mM xylose + 25mM arabinose for 2 and 8h. The main objective was to identifiy genes related to primary metabolism and carbohydrate metabolism in general, for inst...
ORGANISM(S): Aspergillus niger 
2012-05-06 | E-GEOD-37760 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Aspergillus niger amyR and wild type strains grown in maltose and xylose
Microarray experiments were performed for identifying genes that are involved in starch metabolism by analyzing the transcriptomes of wild type strain N402 and amyR deletion strain grown in maltose, as well as by analyzing the transcriptomes of wild type strain N402 grown in maltose and xylose.
ORGANISM(S): Aspergillus niger 
2008-06-01 | E-TABM-324 | biostudies-arrayexpress
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