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MetabolomicsDifferential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells
Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...
2022-11-15 | MTBLS2352 | MetaboLights
TranscriptomicsIntegrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins
This SuperSeries is composed of the following subset Series: GSE34992: Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins (splice array) GSE34993: Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP p...
ORGANISM(S): Homo sapiens 
2012-02-20 | E-GEOD-34996 | biostudies-arrayexpress
MetabolomicsPseudomonas sp. Strain 273 Incorporates Organofluorine into the Lipid Bilayer during Growth with Fluorinated Alkanes
Anthropogenic organofluorine compounds are recalcitrant, globally distributed, and a human health concern. Although rare, natural processes synthesize fluorinated compounds, and some bacteria have evolved mechanisms to metabolize organofluorine compounds. Pseudomonas sp. strain 273 grows with...
2022-06-06 | MTBLS3893 | MetaboLights
ProteomicsProteomics analysis of mycobacterium marinum culture filtrate
Mycobacterium marinum is a pathogenic bacterium that causes infections in both fish and humans. The PE/PPE protein family is unique to mycobacteria and has been implicated in various aspects of mycobacterial pathogenicity. Understanding the presence and potential function of these proteins in M. mar...
ORGANISM(S): Mycobacterium marinum (strain ATCC BAA-535 / M) 
2025-05-13 | PXD050612 | Pride
Mycobacterium marinum Lc-ms Culture filtrate 
UnknownPrognostic significance and biological implications of SM-like genes in mantle cell lymphoma.
Not available
S-EPMC11486876 | biostudies-literature
ProteomicsComparative Phosphoproteome Analysis of Seedling Leaves in Brachypodium distachyon. under Different Drought Conditions
Drought stress is a major abiotic stress affecting plant growth and development. Brachypodiumdistachyon L. is a special model plant for wheat, barley, and several potential biofuel grasses. In this study, we make comparative phosphoproteome analysis of seeding leaves at the three leaf stage in Brach...
ORGANISM(S): Brachypodium distachyon (Purple false brome) (Trachynia distachya) 
2018-10-26 | PXD003522 | Pride
Drought stress Phosphorylation proteins Seeding leaves Bioinformatics Signal transduction Brachypodiumdistachyonl. 
ProteomicsLarge-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L
In this study, we carried out the first large-scale phosphoproteome analysis of seedling leaves in Brachypodium accession Bd21 using TiO2 microcolumns combined with liquid chromatography-tandem mass spectrometry (LC-MS/MS) and MaxQuant software. A total, 1,470 phosphorylation sites in 950 phosphopro...
ORGANISM(S): Brachypodium distachyon (Purple false brome) (Trachynia distachya) 
2016-07-09 | PXD000868 | Pride
Phosphoproteome Protein kinases Leaf Transcription factors Bd21 Phosphorylation motif 
GenomicsGenome wide association study of leprosy in Chinese population

Leprosy is a chronic infectious disease caused by Mycobacterium leprae (M. leprae). Due to M. leprae's narrow host range and an inability to be cultured in vitro, the biological investigation of this disease has been difficult. Host genetic factors have been ...

phs000217.v1.p1 | EGA
UnknownSpatial Transcriptomic and Metabolomic Landscapes of Oral Submucous Fibrosis-Derived Oral Squamous Cell Carcinoma and its Tumor Microenvironment.
Not available
S-EPMC10966560 | biostudies-literature
UnknownIntron Retention of DDX39A Driven by SNRPD2 is a Crucial Splicing Axis for Oncogenic MYC/Spliceosome Program in Hepatocellular Carcinoma.
Not available
S-EPMC11425265 | biostudies-literature
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