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TranscriptomicsClostridium thermocellum ATCC 27405 Transcriptomic Profiles after Exposure to Ethanol, Furfural and Heat Stress
The thermophilic anaerobe Clostridium thermocellum is a candidate consolidated bioprocessing biocatalyst for the conversion of lignocellulosic biomass into ethanol. The microorganism expresses enzymes for both cellulose solubilization and fermentation to produce lignocellulosic ethanol making it a ...
ORGANISM(S): Clostridium thermocellum ATCC 27405 
2013-01-01 | E-GEOD-40402 | biostudies-arrayexpress
TranscriptomicsTranscriptomic profile of Clostridium thermocellum ATCC27405 using switchgrass as carbon source
Clostridium thermocellum is a Gram-positive, anaerobic, thermophilic bacterium that ferments cellulose into ethanol. It is a candidate industrial consolidated bioprocess (CBP) biocatalyst for lignocellulosic bioethanol production to produce bioethanol directly from cellulosic biomass. However, few t...
ORGANISM(S): Clostridium thermocellum ATCC 27405 
2014-05-08 | E-GEOD-26926 | biostudies-arrayexpress
TranscriptomicsThe molecular response of Clostridium thermocellum ATCC 27405 to ethanol shock
Clostridium thermocellum is a Gram-positive, anaerobic, thermophilic bacterium that ferments cellulose into ethanol. It is a candidate industrial consolidated bioprocess (CBP) biocatalyst for lignocellulosic bioethanol production. However, C. thermocellum is relatively sensitive to ethanol compared ...
ORGANISM(S): Clostridium thermocellum ATCC 27405 
2012-08-16 | E-GEOD-25236 | biostudies-arrayexpress
TranscriptomicsSystems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses
Background Zymomonas mobilis ZM4 is a capable ethanologenic bacterium with high ethanol productivity and ethanol tolerance. Previous studies indicated that several stress-related proteins and changes in the ZM4 membrane lipid composition may contribute to ethanol tolerance. However, the molecular m...
ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 
2013-09-04 | E-GEOD-21165 | biostudies-arrayexpress
TranscriptomicsDe Novo Transcriptomic Analysis of Hydrogen Production in the Green Alga Chlamydomonas moewusii through RNA-Seq
Background: Microalgae can make a significant contribution towards meeting global renewable energy needs in both lipid-based liquid biofuel and hydrogen biofuel. The development of energy-related products and chemicals from algae could be accelerated with improvements in systems biology tools, and r...
ORGANISM(S): Chlamydomonas moewusii 
2013-09-04 | E-GEOD-46225 | biostudies-arrayexpress
TranscriptomicsTranscriptomics comparison and transcriptional architecture improvement of Clostridium thermocellum ATCC27405 using systems biology data and bioinformatics approaches
Background: Clostridium thermocellum is a Gram-positive, anaerobic, thermophilic bacterium with a great potential to be a consolidated bioprocessing biocatalyst that can ferment cellulose to ethanol. To understand its physiology and genetic targets for future strain development, we have carried out ...
ORGANISM(S): Ruminiclostridium thermocellum ATCC 27405 
2015-11-08 | E-GEOD-26889 | biostudies-arrayexpress
TranscriptomicsElucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics
Zymomonas mobilis is an excellent ethanologenic bacterium. Biomass pretreatment and saccharification provides access to simple sugars, but also produces inhibitors such as acetate and furfural. Our previous work has identified and confirmed the genetic change of a 1.5-kb deletion in the sodium aceta...
ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 
2014-05-08 | E-GEOD-25443 | biostudies-arrayexpress
ProteomicsProtein gel band method for improving the identification of stem proteins
Identifying the intracellular and cell wall-ionically bound glycoside hydrolases (GHs) carbohydrate esterases (CEs) at the late growth stage of Arabidopsis stems is important for understanding the mechanisms regulating the cell wall integrity. The fact that whole plant stems are used as biomass fee...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2015-05-11 | PXD001852 | Pride
Plant late growth stage Pectin-modifying enzyme Feedstock engineering Plant senescence Biomass recalcitrance Glycoside hydrolase Xylan-modifying enzyme Cell wall proteins 
ProteomicsProtein solution method for direct identification of Arabidopsis stem proteins
Identifying the intracellular and cell wall-ionically bound glycoside hydrolases (GHs) carbohydrate esterases (CEs) at the late growth stage of Arabidopsis stems is important for understanding the mechanisms regulating the cell wall integrity. The fact that whole plant stems are used as biomass fee...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2015-05-11 | PXD001851 | Pride
Plant late growth stage Pectin-modifying enzyme Feedstock engineering Plant senescence Biomass recalcitrance Glycoside hydrolase Xylan-modifying enzyme Cell wall proteins 
TranscriptomicsGenome wide profiling of HrpL-regulated genes in the necrotrophic plant pathogen Dickeya dadantii 3937
Background Dickeya dadantii is a necrotrophic pathogen causing disease in many plants. Previous studies have demonstrated that the type III secretion system (T3SS) of D. dadantii is required for full virulence. HrpL is an alternative sigma factor that binds to the hrp box promoter sequence of T3SS g...
ORGANISM(S): Dickeya dadantii 
2010-10-21 | E-GEOD-17185 | biostudies-arrayexpress
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