Yang Z Z - OmicsDI

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Unknown (61807)
Proteomics (1790)
Transcriptomics (377)
Metabolomics (269)
Genomics (64)
Multiomics (7)
Other (4)
Models (2)

Organisms

Homo sapiens (1045)
Mus musculus (463)
Arabidopsis thaliana (62)
Rattus norvegicus (54)
Oryza sativa (33)
Zea mays (23)
Saccharomyces cerevisiae (23)
Drosophila melanogaster (18)
Gallus gallus (14)
Macaca mulatta (12)
Danio rerio (11)
Triticum aestivum (9)
Oryctolagus cuniculus (4)
synthetic construct (4)
Zymomonas mobilis (3)
Sus scrofa (3)
Citrus limonia (2)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (2)
Harpegnathos saltator (2)
Tetrahymena thermophila (2)
Gossypium hirsutum (2)
Bombyx mori (2)
Oryza sativa Indica Group (2)
Aspergillus fumigatus (2)
Neisseria meningitidis (2)
Salmo salar (2)
Oryza sativa Japonica Group (2)
Caenorhabditis elegans (2)
Triticum timopheevii (1)
Listeria monocytogenes LO28 (1)

Organisms

Homo sapiens (3)
Pseudogalium paradoxum (1)
Yersinia pestis (1)
Streptomyces avermitilis (1)
Caenorhabditis elegans (1)
Mus musculus (1)

Repository

pride (1305)
biostudies-arrayexpress (405)
iProX (398)
MetaboLights (265)
MassIVE (47)
PeptideAtlas (28)
EGA (27)
ENA (9)
PAXDB (6)
GNPS (4)
jPOST (3)
NODE (3)
BioModels (2)
geo (2)
GPMDB (2)
PanoramaPublic (1)

Tissue

Cell culture (313)
Epithelial cell (99)
Brain (92)
Liver (69)
Plant cell (45)
Leaf (42)
Permanent cell line cell (39)
Lung (37)
Blood plasma (34)
Heart (33)
Hepatocyte (31)
Blood serum (27)
Root (24)
Whole body (24)
Plasma Non-glyco (22)
Cell suspension culture (22)
Kidney (22)
Stem cell (22)
Testis (21)
Blood (19)
Blood cell (15)
Embryonic stem cell (15)
B cell (14)
Colon (14)
Embryo (14)
HeLa cell (14)
Macrophage (12)
Spleen (12)
Others (3)
Male Reproductive System (2)

Disease

Disease free (53)
Breast cancer (28)
Colon cancer (18)
Prostate adenocarcinoma (16)
Cardiovascular system disease (14)
Acute leukemia (13)
Type 2 diabetes mellitus (13)
Alzheimer's disease (12)
Cervix carcinoma (10)
Lung cancer (10)
Hepatocellular carcinoma (9)
Kidney cancer (7)
Liver cancer (7)
Brain cancer (5)
Non-small cell lung carcinoma (5)
Pancreatic ductal adenocarcinoma (5)
Malignant neoplasm of ovary (4)
Melanoma (4)
Neuroblastoma (4)
Osteosarcoma (4)
Prostate cancer (4)
Wounds and Injuries (4)
Age related macular degeneration (3)
Brain glioblastoma multiforme (3)
Lymphoma (3)
Multiple myeloma (3)
Not Available (2)
Obsolete hepatitis B virus related hepatocellular carcinoma (2)
COVID-19 (1)
Long COVID (1)

Technology Type

Mass Spectrometry (1305)
Shotgun proteomics (633)
Bottom-up proteomics (236)
Mass spectrometry (192)
Data-dependent acquisition (142)
Affinity purification coupled with mass spectrometry proteomics (113)
Gel-based experiment (96)
Mass spectrometry assay (69)
Data-independent acquisition (69)
Top-down proteomics (59)
Chemical cross-linking coupled with mass spectrometry proteomics (49)
SWATH MS (30)
Proteogenomics (13)
SRM/MRM (12)
All-ion fragmentation (11)
Immunopeptidomics (6)
MSE (6)
Mass spectrometry imaging (6)
NMR spectroscopy (5)
DiaPASEF (4)
RNA mass spectrometry (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Affinity proteomics (2)
Glycoproteomics (2)
ILLUMINA, Illumina Genome Analyzer IIx, Illumina HiSeq 2500 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
HDMSE (1)
Olink affinity proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (16)
Q Exactive (12)
Illumina HiSeq 2500 (4)
LTQ Orbitrap XL (4)
Orbitrap Fusion Lumos (4)
SepSolve GCxGC-BenchTOF (4)
NextSeq 2000 (3)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
Illumina HiSeq 4000 (3)
LTQ Orbitrap Elite (3)
MS:1000031 (3)
Q Exactive HF-X (3)
ScanArray 4000 [PerkinElmer] (2)
Illumina Genome Analyzer II (2)
Instrument (2)
7T solariX FT-ICR (2)
DNBSEQ-G50 (1)
GenePix4000B (1)
GenePix 4200A (1)
Ilumina HiScan H166 (1)
Illumina iScan (1)
Illumina HiScanSQ (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 3000 (1)
MicrOTOF-Q II (1)

Publication Date

2025 (360)
2022 (306)
2024 (283)
2026 (262)
2023 (245)
2021 (198)
2020 (119)
2019 (95)
2015 (86)
2013 (78)
2018 (71)
2014 (67)
2010 (57)
2016 (50)
2017 (48)
2012 (38)
2011 (32)
2008 (24)
2009 (17)
2007 (14)
2005 (7)
2006 (7)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
O24646 (1)
P43254 (1)
Q8LGH4 (1)
Q9FFA7 (1)
Q9FN03 (1)
Q9LIE5 (1)
Q9LTJ6 (1)
Q9M086 (1)
Q9SYX2 (1)

ENSEMBL ID

ENSG00000170477 (25)
ENSG00000147251 (9)
ENSG00000247315 (9)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16704 (76)
CHEBI:30769 (76)
CHEBI:17368 (75)
CHEBI:16750 (70)
CHEBI:15741 (66)
CHEBI:16335 (66)
CHEBI:17596 (65)
CHEBI:16027 (61)
CHEBI:15756 (60)
CHEBI:16708 (60)
CHEBI:15891 (59)
CHEBI:17154 (59)
CHEBI:17568 (59)
CHEBI:17351 (58)
CHEBI:17895 (58)
CHEBI:15428 (57)
CHEBI:30915 (57)
CHEBI:7916 (57)
CHEBI:15354 (55)
CHEBI:16015 (54)
CHEBI:16919 (54)
CHEBI:16196 (52)
CHEBI:16737 (52)
CHEBI:17203 (52)
CHEBI:18012 (52)
CHEBI:17295 (51)
CHEBI:17562 (51)
CHEBI:17750 (51)
CHEBI:32816 (51)
CHEBI:6650 (51)

Metabolite Name

Hypoxanthine (59)
Guanosine (55)
Uridine (54)
Adenosine (50)
Uracil (47)
Adenine (46)
Inosine (46)
Taurine (46)
Creatinine (45)
Creatine (44)
L-Tyrosine (41)
L-Histidine (39)
Uric acid (39)
Choline (37)
Cytidine (37)
L-Arginine (37)
Xanthine (37)
Azelaic acid (36)
Cholic acid (36)
Citric acid (36)
Pantothenic acid (36)
Ornithine (35)
Guanine (34)
Thymidine (34)
Thymine (34)
Betaine (33)
Cytosine (33)
Palmitic acid (33)
Xanthosine (33)
L-Proline (32)

First Public Date

2014 (4)
2024 (2)
2022 (2)
2017 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

The University of Melbourne (14)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (6)
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
USDA-ARS (6)
Cedars-Sinai Medical Center (5)
Institute of Biophysics, Chinese Academy of Sciences (5)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (5)
Michigan State University (5)
Professor and Director Center of Proteomic Analysis BGI-Shenzhen (5)
The University of Sydney (5)
Beijing proteome research center (4)
Biotechnology Research Center, No.2 Tiansheng Road, BeiBei District, Chongqing, 400715,P.R.China (4)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (4)
Fudan University (4)
Mayo Clinic (4)
Sun Yat-sen University (4)
Tongji University (4)
Children's Hospital of Nanjing Medical University (3)
College of Biology, Hunan University, China (3)
Department of Chemistry, Michigan State University (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (3)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, Edinburgh EH4 2XU, UK (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College (3)
Metabolomics-Proteomics Research Center, National Yang Ming Chiao Tung University, Taipei 11221, Taiwan (3)
Nanjing Agricultural University (3)
Ocean University of China (3)

IsPrivate

False (2)

Classification

bacteria (1)

Modification

15.994915 (2)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
4x(2)H labeled dimethylated L-lysine (2)
57.021464 (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
6x(2)H labeled dimethylated L-arginine (1)
71.037114 (1)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (198)
RNA-seq of coding RNA (85)
ChIP-seq (21)
RNA-seq of non coding RNA (18)
ChIP-chip by tiling array (17)
Other (11)
Methylation profiling by array (10)
Comparative genomic hybridization by array (9)
Methylation profiling by high throughput sequencing (7)
Unknown experiment type (6)
Transcription profiling by tiling array (5)
Genotyping by array (3)
Transcription profiling by RT-PCR (3)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by SAGE (2)
Genotyping by high throughput sequencing (2)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Antigen profiling (1)
RNA-seq of total RNA (1)

Release Date

2025 (10506)
2022 (8879)
2024 (8182)
2023 (7999)
2021 (6260)
2020 (4482)
2019 (3197)
2018 (2579)
2017 (2238)
2016 (1699)
2026 (1615)
2015 (1373)
2014 (985)
2013 (640)
2012 (424)
2011 (324)
2010 (246)
2009 (195)
2008 (137)
2007 (91)
2006 (51)
2005 (46)
2004 (21)
2003 (18)
2002 (8)
2001 (7)
2000 (6)
1998 (3)
1999 (1)

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Early transcriptional changes in Zea mays seedlings exposed to Z-3-hexenol

Z-3-Hexenol and other green leaf volatiles have been known to induce defense-related gene expression. Here we investigated the early transcriptional changes in response to Z-3-hexenol. 3-week-old Zea mays seedling (inbred line B73) was exposed to pure Z-3-hexenol (1.5 Î¼M) in a glass cylinder. Contr...

ORGANISM(S): Zea mays

2013-06-15 | E-GEOD-47982 | biostudies-arrayexpress

Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses

Background Zymomonas mobilis ZM4 is a capable ethanologenic bacterium with high ethanol productivity and ethanol tolerance. Previous studies indicated that several stress-related proteins and changes in the ZM4 membrane lipid composition may contribute to ethanol tolerance. However, the molecular m...

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

2013-09-04 | E-GEOD-21165 | biostudies-arrayexpress

Global identification and functional characterization of Z-DNA in rice.

Not available

S-EPMC11933839 | biostudies-literature

Influence of FtsZ GTPase activity and concentration on nanoscale Z-ring structure in vivo revealed by three-dimensional Superresolution imaging.

Not available

S-EPMC4958570 | biostudies-literature

Sensitization of tamoxifen-resistant breast cancer cells by Z-ligustilide through inhibiting autophagy and accumulating DNA damages.

Not available

S-EPMC5438731 | biostudies-literature

Benzodiazepines, z-Hypnotics, and Risk of Dementia: Special Considerations of Half-Lives and Concomitant Use.

Not available

S-EPMC7007460 | biostudies-literature

Genome changes associated with a Zymomonas mobilis sodium acetate-tolerant mutant (AcR)

We report the genome changes associated with a Zymomonas mobilis sodium acetate-tolerant mutant (AcR). We used comparative genomics, transcriptomics, and genetics to show nhaA over-expression conferred sodium acetate (NaAc) tolerance in Z. mobilis. We observed a synergistic effect for sodium and ace...

ORGANISM(S): Zymomonas mobilis

2010-05-05 | E-GEOD-18106 | biostudies-arrayexpress

Zanthoxylum-specific whole genome duplication and recent activity of transposable elements in the highly repetitive paleotetraploid Z. bungeanum genome.

Not available

S-EPMC8417289 | biostudies-literature

Online exposure to marriage information and marriage expectations of Generation Z in China: The roles of marriage value and relative information exposure.

Not available

S-EPMC12558505 | biostudies-literature

Z-Ligustilide Exerted Hormetic Effect on Growth and Detoxification Enzymes of Spodoptera litura Larvae.

Not available

S-EPMC6051125 | biostudies-literature