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TranscriptomicsTranscriptional Response of 0.1%YE-grown M. sedula cells to ferrous sulfate
(from abstract): Iron oxidation is a desirable trait of biomining microorganisms, although the mechanism is not well-understood in extreme thermoacidophiles. The complete genome sequence of the extremely thermoacidophilic archaeon Metallosphaera sedula DSM 5348 (2.2 Mb, ~2300 ORFs) provides insights...
ORGANISM(S): Metallosphaera sedula 
2008-05-02 | E-GEOD-11296 | biostudies-arrayexpress
ProteomicsRole of proteins belonging to the OMP biogenesis machinery for virulence of Yersinia enterocolitica
The outer membrane (OM) of Gram-negative bacteria acts as a physical barrier protecting Gram-negative species from harmful environmental influences. At the same time it facilitates the import of nutrients, the export of proteins, the passage of signaling molecules and also harbors proteins associate...
ORGANISM(S): Yersinia enterocolitica 
2018-10-17 | PXD004429 | Pride
Cell surface molecules Bacterial infection Outer membrane protein biogenesis 
MetabolomicsMetabolomic Profiling of Non-target Metabolites in Streptomyces sp. LZZY-S40
This study aimed to characterize the non-targeted metabolite profile of Streptomyces sp. LZZY-S40 to explore its potential for producing bioactive secondary metabolites. The strain LZZY-S40 was cultivated on ISP 3 agar plates at 28°C for 7 days. Spores were harvested and inoculated into 250 mL Erlen...
2026-03-29 | MTBLS14181 | MetaboLights
ProteomicsProteomic analysis of the early development of the Phalaenopsis amabilis flower bud under low temperature induction
Phalaenopsis amabilis, one of the most important flowers in the current international flower market, is a plant that undergoes vernalization and requires low temperature treatment for flowering. There have been few reports on the proteomic analysis of the development of flower buds. In this study, b...
ORGANISM(S): Phalaenopsis amabilis 
2020-03-20 | PXD013908 | Pride
Phalaenopsis amabilis  low temperature  flower bud induction 
TranscriptomicsTranscription profiling of mouse CD11b+ cells after infection of lethal and sublethal wild type Yersinia enterolitica vs controls reveals IFN-g counteracts YopH mediated immune evasion
Background:; Yersinia outer protein (Yop) H is a secreted virulence factor of Yersinia enterocolitica which inhibits phagocytosis of Y. enterocolitica and promotes virulence of Y. enterocolitica (Ye) in mice. The aim of this study was to address whether and how YopH affects the innate immune respons...
ORGANISM(S): Mus musculus 
2008-06-11 | E-GEOD-11189 | biostudies-arrayexpress
ProteomicsAn automated intact glycopeptide enrichment method for serum site-specific N-glycoproteomic analysis
We developed an automated glycopeptide enrichment method for the analysis of serum site-specific N-glycoproteome. This automated method allowed for processing one sample within 20 min. It showed higher enrichment specificity, more intact glycopeptide identifications, and better quantitative reproduc...
ORGANISM(S): Homo Sapiens (human) 
2021-04-06 | PXD025151 | JPOST Repository
MetabolomicsPlanting Density Affects Panax notoginseng Growth and Ginsenoside Accumulation by Balancing Primary and Secondary Metabolism
Adjusting planting density is a common agricultural practice used to achieve maximum yields. However, whether the quality of medicinal herbs can be improved by implementing appropriate planting densities is still uncertain. The medicinal crop Panax notoginseng was used to analyze the effects ...
2021-07-15 | MTBLS2634 | MetaboLights
ProteomicsIdentification of phosphorylation sites of BAG3
HEK293 cells were cultured in two 10-cm dishes and transfected with BAG3-FLAG as well as Myc vector, CaMKIIβ(D-S)-Myc, and CaMKIIδ(D-S)-MYC, respectively. After the cells were transfected for 24 h, they were treated with the indicated regent. The cells were lysed with NP-40 alternative cell lysis bu...
ORGANISM(S): Homo sapiens (Human) 
2024-08-20 | PXD054722 | Pride
Phosphorylation sites Bag3 Human 
ProteomicsEvaluation of the impacts of detergent introduction on the target identification performance of TPP
In this study, we assessed the target identification performance of TPP in the presence of a commonly used non-ionic detergent or a zwitterionic detergent using a pan-kinase inhibitor staurosporine, our results showed that the addition of either of these detergents significantly impaired the identif...
ORGANISM(S): Homo sapiens (Human) 
2023-07-20 | PXD042332 | Pride
Mild detergents  thermal proteome profiling  target protein identification 
TranscriptomicsAdiponectin improves local lipid metabolism in regenerating pancreatic islets after β-cell ablation
Pathways that stimulate β-cell regeneration remain of great clinical interest, yet effective therapeutic avenues that promote survival or reconstitution of β-cell mass remain elusive. Utilizing a mouse model with inducible β-cell apoptosis followed by adiponectin-mediated regeneration, we aimed to i...
ORGANISM(S): Mus musculus 
2015-01-09 | E-GEOD-64787 | biostudies-arrayexpress
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