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TranscriptomicsTranscription profiling of P.aeruginosa PA14 and P.aeruginosa PA14 metR::phoA grown on swarming plates
Four biological repeats of P.aeruginosa PA14 and four biological repeats of P.aeruginosa PA14 metR::phoA were grown in BM2 swarming media plates containing 62mM potassium phosphate buffer [pH7], 2 mM MgSO4, 10uM FeSO4, 0.4% (wt/vol) glucose, 0.1% (wt/vol) casamino acids and 0.5% agar. Microarray e...
ORGANISM(S): Pseudomonas aeruginosa 
2009-08-20 | E-FPMI-20 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of P.aeruginosa PA14 and P.aeruginosa PA14 metR::phoA
Five biological repeats of P.aeruginosa PA14 and five biological repeats of P.aeruginosa PA14 metR::phoA were grown in liquid BM2 swarming media containing 62mM potassium phosphate buffer [pH7], 2 mM MgSO4, 10uM FeSO4, 0.4% (wt/vol) glucose, and 0.1% (wt/vol) casamino acids. Microarray experiments ...
ORGANISM(S): Pseudomonas aeruginosa 
2009-08-20 | E-FPMI-19 | biostudies-arrayexpress
TranscriptomicsscRNA-seq from Trex1 KO in tumor
Single-cell RNA-seq data for Trex1 WT and KO mice from the tumor. Used for manuscript in submission at Science Advances.
ORGANISM(S): Mus musculus 
2026-03-25 | E-MTAB-16526 | biostudies-arrayexpress
TranscriptomicsLongitudinal scRNAseq profiling of memory B cells in mRNA vaccinated individuals post BA.1-breakthrough infection
Memory B cells play a fundamental role in host defenses against viruses. This dataset aimed at understanding the recruitment and remodeling of the memory B cell repertoire in the context of BA.1-breakthrough infection in BNT162b2 mRNA vaccinated individuals. All four donors enrolled in the study had...
ORGANISM(S): Homo sapiens 
2023-08-15 | E-MTAB-12651 | biostudies-arrayexpress
ProteomicsPPP2R1A mutations cause ATR inhibitor synthetic lethality in ARID1A deficient ovarian clear cell carcinoma
Ovarian clear cell carcinoma (OCCC) is a cancer of unmet need characterized by ARID1A mutation. Prior work identified an ARID1A/ATR synthetic lethality, information that led to phase II clinical trials. Using genome-wide CRISPR-Cas9 mutagenesis and interference screens, we identified protein phospha...
ORGANISM(S): Homo sapiens (Human) 
2023-05-10 | PXD040422 | Pride
Atr Arid1a Ovarian clear cell carcinoma Synthetic lethality 
ProteomicstimsTOF Pro datasets for CCS prediction with Mascot-Percolator.
Tryptic digested E. coli dataset fractionated by SCX stagetip and applied to test the CCS prediction model. The Peaklist from the MS/MS spectra as mascot generic format (MGF) was created by compass DataAnalysis 5.2.216.271.5315. Protein and peptides were identified by by Mascot-Percolator.
ORGANISM(S): Escherichia Coli 
2021-09-06 | PXD026087 | JPOST Repository
UnknownSecondary cytogenetic abnormalities in core-binding factor AML harboring inv(16) vs t(8;21).
Not available
S-EPMC8152510 | biostudies-literature
TranscriptomicsCircadian analysis of human healthy patella tendon
To identify if genes is regulated by time of day in human tendon, RNAseq analysis was performed on biopsies taken from patella tendon 12 hours apart in young healthy subjects (9 AM and 9 PM).
ORGANISM(S): Homo sapiens 
2023-02-09 | E-MTAB-11937 | biostudies-arrayexpress
TranscriptomicsCircadian analysis of human tendinopathic patella tendon
To identify if genes is regulated by time of day in human tendinopathic tendon, RNAseq analysis was performed on biopsies taken from tendinopathic and contralateral patella tendon 12 hours apart in young tendinopathic subjects (9 AM and 9 PM).
ORGANISM(S): Homo sapiens 
2023-02-09 | E-MTAB-11938 | biostudies-arrayexpress
UnknownBeyond <i>BRCA</i> deficiency: Clinical and molecular predictors of survival in patients with <i>BRCA</i>-deficient tubo-ovarian high-grade serous carcinoma.
Not available
S-EPMC12486008 | biostudies-literature
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