Yin Man M - OmicsDI

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Transcriptomics (227)
Unknown (50)
Genomics (36)
Proteomics (19)
Metabolomics (8)
Other (1)

Organisms

Homo sapiens (175)
Mus musculus (39)
Mycobacterium tuberculosis (7)
Macaca mulatta (4)
Rattus norvegicus (3)
Bos taurus (2)
Enterococcus faecalis (2)
Pseudomonas aeruginosa (2)
Escherichia coli (2)
Gallus gallus (2)
Saccharomyces cerevisiae (2)
Candida albicans (2)
Arabidopsis thaliana (2)
Stenotrophomonas maltophilia (1)
Trichinella spiralis (1)
Bos grunniens (1)
Helicobacter pylori P12 (1)
Vibrio alginolyticus (1)
Limanda limanda (1)
Anguilla anguilla (1)
Macaca nemestrina (1)
Bombyx mori (1)
Pan troglodytes (1)
Xenopus laevis (1)
Neisseria meningitidis (1)
Listeria monocytogenes (1)
Campylobacter jejuni (1)
Klebsiella pneumoniae (1)
Staphylococcus aureus (1)
Streptococcus pneumoniae (1)

Repository

biostudies-arrayexpress (250)
EGA (14)
MassIVE (11)
MetaboLights (8)
PAXDB (4)
iProX (3)
GPMDB (1)
pride (1)

Tissue

Cell culture (1)

Disease

Normal (2)
Neuroepithelioma (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
Colon cancer metastasis (1)
Acute promyelocytic leukemia (1)
Osteosarcoma (1)
Not Available (1)

Technology Type

Mass spectrometry (6)
Mass spectrometry assay (2)
Bottom-up proteomics (1)
Mass Spectrometry (1)

Instrument Platform

NextSeq 500 (5)
Illumina NovaSeq 6000 (4)
Orbitrap Eclipse (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Other (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Orbitrap Fusion Lumos (2)
Q Exactive (2)
IScan Illumina (1)
454 GS FLX+ (1)
GenePix Professional 4200A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
Instrument (1)
Dionex UltiMate 3000 Rapid Separation nanoLC coupled to the Orbitrap Elite Mass Spectrometer (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)

Publication Date

2014 (43)
2012 (36)
2010 (34)
2013 (31)
2011 (27)
2015 (16)
2008 (15)
2016 (14)
2007 (9)
2018 (7)
2023 (6)
2022 (6)
2009 (6)
2025 (5)
2024 (5)
2020 (5)
2026 (3)
2005 (3)
2017 (2)
2006 (2)
2019 (2)

UNIPROT ID/AC

1433B_HUMAN (3)
1433F_HUMAN (3)
1433G_HUMAN (3)
1433S_HUMAN (3)
1433T_HUMAN (3)
1433Z_HUMAN (3)
2A5A_HUMAN (3)
2A5B_HUMAN (3)
2A5D_HUMAN (3)
2A5E_HUMAN (3)
2A5G_HUMAN (3)
2AAA_HUMAN (3)
2AAB_HUMAN (3)
2ABA_HUMAN (3)
2ABB_HUMAN (3)
2ABD_HUMAN (3)
2ABG_HUMAN (3)
3BP1_HUMAN (3)
3BP5L_HUMAN (3)
3HAO_HUMAN (3)
3HIDH_HUMAN (3)
3MG_HUMAN (3)
41_HUMAN (3)
4EBP1_HUMAN (3)
4EBP2_HUMAN (3)
4ET_HUMAN (3)
4F2_HUMAN (3)
5HT1A_HUMAN (3)
5HT1B_HUMAN (3)
5HT2A_HUMAN (3)

CHEBI ID

CHEBI:186351 (2)
CHEBI:27410 (2)
CHEBI:61822 (2)
CHEBI:86102 (2)
CHEBI:131439 (1)
CHEBI:131744 (1)
CHEBI:132004 (1)
CHEBI:132007 (1)
CHEBI:132502 (1)
CHEBI:132539 (1)
CHEBI:132540 (1)
CHEBI:132543 (1)
CHEBI:132544 (1)
CHEBI:132591 (1)
CHEBI:132676 (1)
CHEBI:132677 (1)
CHEBI:133142 (1)
CHEBI:133229 (1)
CHEBI:133432 (1)
CHEBI:133629 (1)
CHEBI:133710 (1)
CHEBI:134239 (1)
CHEBI:134241 (1)
CHEBI:134242 (1)
CHEBI:134243 (1)
CHEBI:134264 (1)
CHEBI:134270 (1)
CHEBI:134271 (1)
CHEBI:134428 (1)
CHEBI:134429 (1)

Metabolite Name

4-(Methylthio)-2-oxobutyric acid (2)
4-Nitroaniline (2)
Abexinostat (2)
Adenine (2)
Adenosine (2)
Alanine (2)
Allolithocholic acid (2)
Aprobarbital (2)
Arginine (2)
Butabarbital (2)
Carnitine (2)
Citrulline (2)
Cytidine (2)
Cytosine (2)
Epirizole (2)
Gentamicin (2)
Glutarylcarnitine (2)
Guanine (2)
Guanosine (2)
Histamine (2)
Histidine (2)
Isoleucine (2)
Kynurenine (2)
LPC(O-20:0) (2)
Leu-Gly-Pro (2)
Leu-Leu (2)
Leu-Val (2)
Leucine (2)
Lys-Arg (2)
Lysine (2)

Study type

Transcription profiling by array (121)
RNA-seq of coding RNA (33)
Transcription profiling by RT-PCR (22)
ChIP-seq (17)
Other (13)
Methylation profiling by array (8)
ChIP-chip by tiling array (6)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (6)
Methylation profiling by high throughput sequencing (4)
Unknown experiment type (2)
Genotyping by array (2)
RNA-seq of coding RNA from single cells (2)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
ATAC-seq (1)
Hi-C (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2014 (44)
2012 (36)
2010 (34)
2013 (31)
2011 (27)
2015 (19)
2016 (15)
2008 (15)
2022 (12)
2023 (10)
2025 (9)
2007 (9)
2021 (8)
2024 (7)
2009 (6)
2020 (4)
2018 (4)
2017 (3)
2005 (3)
2026 (2)
2006 (2)

Lab affiliation

Harvard Medical School (1)

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Mechanisms of the Jian Pi Tiao Gan Yin in the treatment of simple obesity revealed by network pharmacology.

Not available

S-EPMC9011268 | biostudies-literature

M. tuberculosis Rv3263 Knockout

We determine gene expression profile for the knockout of Rv3263 (DNA Methyltransferase) and compared to wildtype M. tuberculosis. Two RNA-Seq datasets are included: wildtype (H37Rv_SS1) and knockout (delta_Rv3263)

ORGANISM(S): Mycobacterium tuberculosis H37Rv

2013-11-21 | E-GEOD-52551 | biostudies-arrayexpress

Transplantation of a beating heart: A first in man.

Not available

S-EPMC9019404 | biostudies-literature

Evolutionary comparison of CTCF and YY1 binding in primate lymphoblastoid cell lines

We performed an evolutionary comparison of the binding of the TF CTCF in human, chimpanzee, gorilla, orang-utan, macaque, baboon and marmoset using lymphoblastoid cell lines (LCLs). We also probes YY1 binding in human, chimpanzee, orang-utan and baboon LCLs as well as human and mouse liver.

ORGANISM(S): Pan troglodytes

2013-11-20 | E-MTAB-1511 | biostudies-arrayexpress

miR-134/487b/655 Cluster regulates TGF-M-NM-2-induced epithelial-mesenchymal transition and drug resistance to Gefitinib by targeting MAGI2 in lung adenocarcinoma cells.

Epithelial-mesenchymal transition (EMT) has recently been recognized as a key element of cell invasion, migration, metastasis, and drug resistance in several types of cancer, including non-small cell lung cancer (NSCLC). Our aim was to clarify microRNA (miRNA) -related mechanisms underlying EMT foll...

ORGANISM(S): Homo sapiens

2013-10-30 | E-GEOD-51828 | biostudies-arrayexpress

miRNA profiling of Macaca mulatta intact duodenum samples following chronic Delta9 Tetrahydrocannabinol (M-NM-^T9-THC) treatment to SIV infected rhesus macaques

The study describes miRNA expression in intact duodenum following chronic delta 9 tetrahydrocannabinol (M-NM-^T9-THC) administration to SIV-infected rhesus macaques. Chronic M-NM-^T9-THC administration to uninfected macaques significantly and positively modulated intestinal miRNA expression by incre...

ORGANISM(S): Macaca mulatta

2014-11-19 | E-GEOD-61654 | biostudies-arrayexpress

The Mycobacterium tuberculosis ECF sigma Factor sE: role in global gene expression and survival in macrophages

In previously published work, we identified three Mycobacterium tuberculosis sigma (s) factor genes responding to heat shock (sigB, sigE and sigH ). Two of them (sigB and sigE ) also responded to SDS exposure. As these responses to stress suggested that the s factors encoded by these genes could be ...

ORGANISM(S): Mycobacterium tuberculosis

2007-08-02 | E-GEOD-8664 | biostudies-arrayexpress

Phasevarion mediated random switching of gene expression in Helicobacter Pylori

Many host-adapted bacterial pathogens contain DNA methyltransferases (mod genes) that are subject to phase-variable expression (high-frequency reversible ON/OFF switching of gene expression). In Haemophilus influenzae, Neissera Meningtidis and Neisseria Gonorrhoeae, the random switching of the modA ...

ORGANISM(S): Helicobacter pylori P12

2012-01-16 | E-GEOD-26759 | biostudies-arrayexpress

Regulation of the Mycobacterium tuberculosishypoxic response gene encoding alpha-crystallin

Unlike many pathogens that are overtly toxic to their hosts, the primary virulence determinant of Mycobacterium tuberculosis appears to be its ability to persist for years or decades within humans in a clinically latent state. Since early in the 20th century latency has been linked to hypoxic condit...