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ModelsZhang2009 - Genome-scale metabolic network of Thermotoga maritima
Zhang2009 - Genome-scale metabolic network of Thermotoga maritima This model is described in the article: Three-dimensional structural view of the central metabolic network of Thermotoga maritima. Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Woole...
2015-07-30 | MODEL1507180048 | BioModels
MetabolomicsTranscriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights
ProteomicsChemical Proteomics Tracks Virus Entry and Uncovers NCAM1 As Zika Virus Receptor
We present a time-resolved chemical proteomic strategy to track the early-stage entry of ZIKV into host cells. ZIKV was labeled on its surface with a chemical probe, which carries a photocrosslinker to covalently link virus-interacting proteins in living cells on UV exposure at different time points...
ORGANISM(S): Macaca mulatta (Rhesus macaque) 
2020-09-11 | PXD020119 | Pride
Proteomics zika virus 
UnknownLncRNA ZFAS1 as a SERCA2a Inhibitor to Cause Intracellular Ca2+ Overload and Contractile Dysfunction in a Mouse Model of Myocardial Infarction.
Not available
S-EPMC5959220 | biostudies-literature
MetabolomicsTranscriptomic and metabolomic analyses reveal the differential accumulation of phenylpropanoids and terpenoids in hemp autotetraploid and its diploid progenitor

Background

Cannabis sativa, a dioecious plant that has been cultivated worldwide for thousands of years, is known for its secondary metabolites, especially cannabinoids, which possess several medicinal effects. In this study, we investigated the autopolyploidization effects on the biosynthes...
2023-09-21 | MTBLS6032 | MetaboLights
ProteomicsProteomics analysis LC-MS/MS of human bladder cancer cells
A total of 6,526 proteins were identified in this study, of which 5880 proteins contained quantitative information. 1.2 times as the threshold of differential expression change, and statistical test t-test p-value<0.05 as the threshold of significance, among the quantified proteins, the expression...
ORGANISM(S): Homo sapiens (Human) 
2022-02-17 | PXD026559 | Pride
Lc-ms/ms Bladder Human 
UnknownA significant quantitative trait locus on chromosome Z and its impact on egg production traits in seven maternal lines of meat-type chicken.
Not available
S-EPMC9361671 | biostudies-literature
ProteomicsAutomated enrichment and co-extraction pipeline for efficient analysis of urinary extracellular vesicle protein and RNA
Extracellular vesicles (EVs) cargoes have great potential as promising biomarkers for disease diagnosis. However, traditional methods for EV enrichment and cargo extraction are inefficient, limiting the accessibility of valuable biological information. Here, we present a bead-based pipeline, designe...
ORGANISM(S): Homo sapiens (Human) 
2025-04-11 | PXD060304 | Pride
Protein Co-extraction Extracellular vesicles Rna Automation Urine 
ProteomicsO-GlcNAc pattern of sOGT regulates its substrate selectivity and function
O-GlcNAcylation occurs on thousands of proteins involved in various cellular events. O-GlcNAc transferase (OGT), one of the enzymes responsible for protein O-GlcNAcylation, is known to be auto-O-GlcNAcylated at multiple sites. However, the role of O-GlcNAcylation on OGT is still unknown. Here, we re...
ORGANISM(S): Homo sapiens (Human) 
2019-09-16 | PXD010173 | Pride
O-glcnac pattern sogt site mapping functional regulation 
TranscriptomicsTranscription profiling of endometrial epithelial cells (EECs) to understand actions of tamoxifen in the uterus and its molecular effectors in endometrial carcinogenesis
The molecular explanation for tamoxifen serving as a breast cancer treatment but displaying partial estrogenic in the uterus is not known. Previously, we reported that differential promoter context and cofactor recruitment contribute to the tissue specificity of tamoxifen. Here, we investigated the ...
ORGANISM(S): Homo sapiens 
2007-09-08 | E-GEOD-3013 | biostudies-arrayexpress
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