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TranscriptomicsA transcriptional map of the impact of endurance exercise training on skeletal muscle phenotype (resting muscle after endurance training)
The molecular pathways which are activated and contribute to physiological remodeling of skeletal muscle in response to endurance exercise have not been fully characterized. We previously reported that ~800 gene transcripts are regulated following 6 weeks of supervised endurance training in young se...
ORGANISM(S): Homo sapiens 
2012-02-10 | E-GEOD-35659 | biostudies-arrayexpress
MetabolomicsHuman Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
Autism spectrum disorder (ASD) manifests as alterations in complex human behaviors including social communication and stereotypies. In addition to genetic risks, the gut microbiome differs between typically-developing (TD) and ASD individuals, though it remains unclear whether the microbiome contrib...
2019-07-04 | MTBLS726 | MetaboLights
TranscriptomicsDifferential effects of krill oil and fish oil on the hepatic transcriptome in mice
Dietary supplementation with ω-3 polyunsaturated fatty acids (ω-3 PUFAs), specifically the fatty acids docosahexaenoic acid (DHA; 22:6 ω-3) and eicosapentaenoic acid (EPA; 20:5 ω-3), is known to have beneficial health effects including improvements in glucose and lipid homeostasis and modulation of ...
ORGANISM(S): Mus musculus 
2011-07-21 | E-GEOD-29572 | biostudies-arrayexpress
TranscriptomicsA transcriptional map of the impact of endurance exercise training on skeletal muscle phenotype
This SuperSeries is composed of the following subset Series: GSE18583: Baseline skeletal muscle gene expression GSE35659: A transcriptional map of the impact of endurance exercise training on skeletal muscle phenotype (resting muscle after endurance training) Refer to individual Series
ORGANISM(S): Homo sapiens 
2012-02-10 | E-GEOD-35661 | biostudies-arrayexpress
TranscriptomicsControl of Embryonic Stem Cell State by Mediator and Cohesin (Agilent gene expression data)
The key transcription factors that control the embryonic stem cell gene expression program have been identified, but how they function to implement this program is not well understood. While screening for genes essential for maintenance of ES cell state, we identified many components of the Mediato...
ORGANISM(S): Mus musculus 
2010-08-12 | E-GEOD-22556 | biostudies-arrayexpress
GenomicsControl of Embryonic Stem Cell State by Mediator and Cohesin (Illumina ChIP-Seq data)
The key transcription factors that control the embryonic stem cell gene expression program have been identified, but how they function to implement this program is not well understood. While screening for genes essential for maintenance of ES cell state, we identified many components of the Mediato...
ORGANISM(S): Mus musculus 
2010-08-12 | E-GEOD-22562 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation of Tcf3, Oct4 and nanog in mouse embryonic stem cells
Embryonic stem cells have a unique regulatory circuitry, largely controlled by the transcription factors Oct4, Sox2 and Nanog, which generates a gene expression program necessary for pluripotency and self-renewal (Boyer et al. 2005; Loh et al. 2006; Chambers et al. 2003; Mitsui et al. 2003; Nichols ...
ORGANISM(S): Mus musculus 
2008-02-28 | E-TABM-409 | biostudies-arrayexpress
ProteomicsSexual Dimorphism in the Extracellular and Pericellular Matrix of Articular Cartilage
Male and female collagen-enriched fraction of cartilage from bovine knees. Full thickness cartilage plugs without subchondral bone were digested with chondroitinase for 24 hours to remove proteoglycans. Cartilage was further decellularized with SDS. LUM1_811145: channels 126, 127, 128 female, chan...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) 
MSV000092997 | MassIVE
TranscriptomicsStockholm dataset for ageing prototype diagnostic
Muscle biopsy samples from healthy male subjects at the baseline belonging to either <29y or >59y age range. These samples were used to design a prototype of multi-tissue molecular diagnostic of healthy physiological age. Resting skeletal muscle sample after an overnight fast. related to GSE18583
ORGANISM(S): Homo sapiens 
2015-08-05 | E-GEOD-59880 | biostudies-arrayexpress
TranscriptomicsPredicting the evolution of metastatic disease in breast cancer: results from 50 years of autopsies
This is a genomic analysis of breast cancer metastasis using array based CGH and is part of a large study investigating the patterns and evolution of metastases from breast cancer using autopsy material accumulated over the last 50 years from a single institution. The samples used in the genomic pro...
ORGANISM(S): Homo sapiens 
2013-11-11 | E-GEOD-46826 | biostudies-arrayexpress
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