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ProteomicsMacrophage membrane proteomics upon depolarization
After depolarization treatment, a series of membrane protein were changed significantly. We collected the total membrane protein of the mouse peritoneal macrophages as previously (Karmakar et al., 2020), and then analyzed by Mass Spectrometry
ORGANISM(S): Mus musculus (Mouse) 
2022-05-07 | PXD033322 | Pride
Membrane protein Depolarization 
ProteomicsA Quantitative Yeast Aging Proteomics Analysis Reveals Novel Aging Regulators
Extending lifespan from yeast to mammals, calorie restriction (CR) is the most conserved longevity intervention. Numerous conserved pathways regulating aging and mediating CR have been identified; however, the overall proteomic changes during these conditions remain largely unexplored. We compared p...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2022-02-15 | PXD018917 | Pride
Yeast Aging Caloric restriction Proteome Replicative aging 
UnknownLong noncoding RNA NEAT1, regulated by LIN28B, promotes cell proliferation and migration through sponging miR-506 in high-grade serous ovarian cancer.
Not available
S-EPMC6113267 | biostudies-literature
UnknownLong noncoding RNA TINCR facilitates hepatocellular carcinoma progression and dampens chemosensitivity to oxaliplatin by regulating the miR-195-3p/ST6GAL1/NF-κB pathway.
Not available
S-EPMC8722212 | biostudies-literature
UnknownEnhanced formation of tertiary lymphoid structures shapes the anti-tumor microenvironment in hepatocellular carcinoma after FOLFOX-HAIC therapy.
Not available
S-EPMC12490226 | biostudies-literature
ProteomicsProteomic analysis of hydrolase levels in the lysosomes from macrophages stimulated with or without LPS via LC_MS
Proteomic analysis of hydrolase levels in the lysosomes from macrophages stimulated with or without LPS via liquid chromatography–mass spectrometry (LC-MS), highlighting the expected LPS-induced increase in accumulation of proteases, ribonucleases (RNase) and other hydrolases.
ORGANISM(S): Mus Musculus 
2024-10-14 | PXD056776 |
ProteomicsDegradation analysis of SARS-CoV-2 proteins after incubation with h-lysoTRAP based on the proteomics data
To investigate the degradation activity of proteases inside lysosomal "TRAP", we conducted proteomic analysis of lysosomal "TRAP" with trapped authentic SARS-CoV-2.
ORGANISM(S): Severe Acute Respiratory Syndrome Coronavirus 2 
2024-10-15 | PXD056801 |
ProteomicsDetection of residual peptides of SARS-CoV-2 peptide after a 24-hour co-incubation with h-lysoTRAP via proteomic analysis
To gain a deeper insight into the residual SARS-CoV-2 peptides after degradation, we directly detected fragments (lower than 10 (kilodalton) kDa) of degraded SARS-CoV-2 via LC-MS, and overlapped these with the 3D crystal structure of SARS-CoV-2 proteins.
ORGANISM(S): Severe Acute Respiratory Syndrome Coronavirus 2 
2024-10-18 | PXD056987 |
ProteomicsDegradation analysis of SARS-CoV-2 proteins by h-lysoTRAP
To investigate the degradation activity of proteases inside lysosomal "TRAP", we conducted proteomic analysis of lysosomal "TRAP" with trapped authentic SARS-CoV-2.
ORGANISM(S): Severe Acute Respiratory Syndrome Coronavirus 2 
2024-10-18 | PXD056985 |
ProteomicsA Pandas complex adapted for piRNA-guided transposon silencing and heterochromatin formation, Panx-IP-MS
The repression of transposons by the Piwi-interacting RNA (piRNA) pathway is essential to protect animal germ cells. In Drosophila ovaries, Panoramix (Panx) enforces transcriptional silencing by binding to the target-engaged Piwi-piRNA complex, although the precise mechanisms by which this occurs re...
ORGANISM(S): Drosophila Melanogaster 
2019-08-06 | PXD014926 |
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