Yuan X X - OmicsDI

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Unknown (18916)
Proteomics (509)
Transcriptomics (288)
Metabolomics (87)
Genomics (86)
Other (4)
Multiomics (2)
Models (1)

Organisms

Homo sapiens (406)
Mus musculus (175)
Rhizobium leguminosarum (26)
Rattus norvegicus (17)
Danio rerio (16)
Saccharomyces cerevisiae (16)
Streptomyces coelicolor (14)
Streptomyces venezuelae (14)
Streptomyces coelicolor A3(2) (12)
Drosophila melanogaster (9)
Arabidopsis thaliana (9)
Oryza sativa (5)
Macaca mulatta (5)
Tetrahymena thermophila (4)
Gossypium hirsutum (2)
Zea mays (2)
Mycobacterium tuberculosis (2)
Candida albicans (2)
cellular organisms (1)
Acromyrmex echinatior (1)
Deinococcus gobiensis (1)
Streptomyces turgidiscabies (1)
Streptomyces scabiei (1)
Streptomyces formicae (1)
Streptomyces lividans (1)
Clonorchis sinensis (1)
Escherichia coli BW25113 (1)
Mus musculus domesticus (1)
Porphyromonas gingivalis (1)
Vitis vinifera (1)

Organisms

Xylella fastidiosa subsp. fastidiosa (5)
Xylella fastidiosa subsp. multiplex (3)
Xylella fastidiosa subsp. sandyi (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (317)
pride (312)
iProX (170)
MetaboLights (84)
EGA (43)
MassIVE (21)
ENA (13)
jPOST (4)
GNPS (3)
PeptideAtlas (3)
GPMDB (2)
BioModels (1)
geo (1)
PanoramaPublic (1)

Tissue

Cell culture (86)
Epithelial cell (28)
Brain (26)
Permanent cell line cell (11)
Stem cell (10)
Blood cell (9)
Heart (9)
Blood (8)
Blood serum (8)
Blood plasma (7)
Cell suspension culture (7)
Fibroblast (7)
Liver (7)
Macrophage (7)
Leaf (6)
Lung (6)
Testis (6)
Whole body (6)
Embryo (5)
Embryonic stem cell (5)
HeLa cell (5)
Kidney (5)
Bone marrow (4)
Colon (3)
Early embryonic cell (3)
Plant cell (3)
Primary cell (3)
Sperm (3)
Male Reproductive System (2)
Others (1)

Disease

Cervix carcinoma (8)
Disease free (6)
Acute leukemia (5)
Alzheimer's disease (5)
Breast cancer (5)
Colon cancer (5)
Glioblastoma (4)
Prostate adenocarcinoma (4)
Malaria (3)
Not Available (2)
Autism spectrum disorder (2)
Influenza (2)
Malignant neoplasm of ovary (2)
Mixed disorder as reaction to stress (2)
Pancreatic ductal adenocarcinoma (2)
Normotensive (1)
Osteocytes/osteoblasts (1)
Colorectal carcinoma (1)
Normal (1)
Acute kidney failure (1)
Alopecia (1)
COVID-19 (1)
Carcinoma (1)
Cardiovascular system disease (1)
Esophageal carcinoma (1)
Hepatocellular carcinoma (1)
Machado-Joseph disease (1)
Myelodysplastic syndrome (1)
Nephrolithiasis (1)
Osteoarthritis (1)

Technology Type

Mass Spectrometry (312)
Shotgun proteomics (142)
Mass spectrometry (59)
Bottom-up proteomics (58)
Affinity purification coupled with mass spectrometry proteomics (30)
Data-dependent acquisition (25)
Mass spectrometry assay (23)
Data-independent acquisition (21)
Gel-based experiment (20)
Top-down proteomics (16)
SWATH MS (9)
Proteogenomics (5)
Affinity proteomics (4)
All-ion fragmentation (4)
DiaPASEF (3)
SRM/MRM (3)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Olink affinity proteomics (2)
AB SOLiD 4 System (1)
Aperio (1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
ZCall, HumanExome_12v1.1_A -GenCall (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina HiSeq 2000 (12)
Q Exactive (6)
Illumina HiSeq 2500 (5)
LTQ Orbitrap Velos (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (3)
Illumina NovaSeq X (2)
LTQ XL (2)
Orbitrap Fusion Lumos (2)
Instrument (2)
Q Exactive Plus (2)
I686 (1)
Dell PowerEdge 630 with Intel Xeon E5-2630 processor (8 cores 16 threads) and 94 GB memory running CentOS Linux release 7.5.1804. (1)
Not applicable (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Illumina NovaSeq X Plus (1)
RNeasy Mini Kit (QIAGEN) (1)
NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
NextSeq 500 (1)
6545 Q-TOF LC/MS (1)
Bruker maXis ESI Quadrupole TOF (1)
Exactive Plus (1)
LTQ Orbitrap (1)
LTQ Orbitrap Discovery (1)
Orbitrap Exploris 240 (1)
Orbitrap ID-X (1)
Q Exactive HF-X (1)
Synapt G2-S HDMS (1)
ZenoTOF 7600 (1)

Publication Date

2022 (96)
2025 (94)
2026 (88)
2024 (86)
2023 (76)
2021 (61)
2013 (54)
2010 (51)
2014 (42)
2018 (41)
2015 (39)
2012 (31)
2019 (30)
2020 (28)
2016 (25)
2011 (19)
2017 (14)
2009 (14)
2008 (13)
2007 (8)
2005 (3)
2006 (2)

UNIPROT ID/AC

A0A024R563 (3)
A0A087WTX5 (3)
A0A087WYL9 (3)
A0A087X130 (3)
A0A087X1V9 (3)
A0A0A0MS07 (3)
A0A0A0MSA7 (3)
A0M8Q6 (3)
A0MZ66 (3)
A2NUT2 (3)
A5A3E0 (3)
A6NNZ2 (3)
B4DPR2 (3)
B4E3A4 (3)
B7Z2G3 (3)
B7Z2U2 (3)
B7Z9B7 (3)
B7ZME8 (3)
B9A064 (3)
C9JM50 (3)
C9JSZ1 (3)
C9JZR2 (3)
D6RE86 (3)
E5RK69 (3)
E7EVA0 (3)
E9PFZ2 (3)
E9PRE2 (3)
H0Y2V6 (3)
H0Y5B0 (3)
H0Y5C6 (3)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000147251 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17154 (26)
CHEBI:30769 (26)
CHEBI:16704 (24)
CHEBI:17368 (24)
CHEBI:17568 (23)
CHEBI:16040 (22)
CHEBI:17596 (22)
CHEBI:15891 (21)
CHEBI:16708 (21)
CHEBI:15354 (20)
CHEBI:15756 (20)
CHEBI:16335 (20)
CHEBI:16737 (20)
CHEBI:17351 (20)
CHEBI:17562 (20)
CHEBI:17895 (20)
CHEBI:7916 (20)
CHEBI:15741 (19)
CHEBI:16750 (19)
CHEBI:16919 (19)
CHEBI:28044 (19)
CHEBI:15428 (18)
CHEBI:16015 (18)
CHEBI:17015 (18)
CHEBI:17203 (18)
CHEBI:17361 (18)
CHEBI:17405 (18)
CHEBI:17750 (18)
CHEBI:33699 (1)
CHEBI:36080 (1)

Metabolite Name

Creatinine (19)
Adenine (16)
Uracil (16)
Uridine (16)
Adenosine (15)
Cytosine (15)
Hypoxanthine (15)
Inosine (15)
Palmitic acid (14)
Betaine (13)
Creatine (13)
L-Proline (13)
L-Tyrosine (13)
Nicotinamide (13)
4-Pyridoxic acid (12)
Cytidine (12)
L-Phenylalanine (12)
Leucine (12)
N-Acetylputrescine (12)
Taurine (12)
Guanosine (11)
L-Glutamine (11)
Linoleic acid (11)
Uric acid (11)
Xanthine (11)
ADP (10)
Allantoin (10)
Choline (10)
Glutamine (10)
Guanine (10)

First Public Date

2017 (7)
2019 (2)
2026 (1)
2023 (1)
2022 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (9)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (4)
Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (4)
BGI Research (3)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Epigenetics Program, Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania (3)
Key Laboratory of Brain Functional Genomics of Shanghai and Ministry of Education, Institute of Brain Functional Genomics, School of Life Science and the Collaborative Innovation Center for Brain Science, East China Normal University, Shanghai, China (3)
Zhejiang University (3)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Central South University (2)
College of Agronomy, Jiangxi Agricultural University (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Guangxi University (2)
Huazhong University of Science and Technology (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 (2)
School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China ( lab head ) (2)
School of Life Sciences, Xiamen University (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
Soochow University (2)
St Jude Children's Research Hospital (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (2)
Sun Yat-sen University (2)
The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institutes of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Hangzhou 310022, China (2)
The First Affiliated Hospital of Fujian Medical University (2)
hong kong baptist university (2)
"Institute of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology, Guangzhou 510006, China" (1)

IsPrivate

False (1)

Modification

N6 (2)
15.994915 (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (176)
RNA-seq of coding RNA (44)
ChIP-seq (21)
Comparative genomic hybridization by array (12)
RNA-seq of non coding RNA (12)
Methylation profiling by high throughput sequencing (9)
Unknown experiment type (8)
Other (7)
ChIP-chip by tiling array (6)
High-throughput sequencing (6)
Methylation profiling by array (4)
ChIP-chip by array (2)
ATAC-seq (2)
RNA-seq of coding RNA from single cells (2)
One-color microarray (1)
Human - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Single nucleus RNA sequencing (1)

Release Date

2025 (3139)
2022 (2655)
2023 (2426)
2024 (2423)
2021 (1993)
2020 (1501)
2019 (1021)
2018 (850)
2017 (696)
2016 (534)
2026 (450)
2015 (417)
2014 (325)
2013 (232)
2012 (156)
2010 (123)
2011 (104)
2009 (65)
2008 (54)
2007 (26)
2006 (16)
2005 (12)
2004 (6)
2003 (4)
2001 (2)
2002 (1)
1999 (1)
1998 (1)

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Effects of X-ray and electron beam irradiation on wine quality: Emphasizing phenolic compounds and aroma profiles.

Not available

S-EPMC11780950 | biostudies-literature

The ULK3 kinase is a key determinant of keratinocyte self-renewal and tumorigenesis targeting the arginine methylome

Epigenetic mechanisms oversee epidermal homeostasis and oncogenesis. The identification of kinases controlling these processes has direct therapeutic implications. We show that ULK3 is a nuclear kinase with elevated expression levels in squamous cell carcinomas (SCCs) arising in multiple body sites,...

2022-11-14 | MTBLS5155 | MetaboLights

Activation of liver-X-receptor α but not liver-X-receptor β protects against myocardial ischemia/reperfusion injury.

Not available

S-EPMC4527689 | biostudies-literature

Femtosecond X-ray induced changes of the electronic and magnetic response of solids from electron redistribution.

Not available

S-EPMC6872582 | biostudies-literature

Sex chromosomal dimorphisms narrated by X-chromosome translocation in a spiny frog (Quasipaa boulengeri).

Not available

S-EPMC6260737 | biostudies-literature

Deciphering the composition and microstructure of Jin-Yuan period oil-spot glazes from the archaeological site of Jining Lu of China.

Not available

S-EPMC12514223 | biostudies-literature

Bioinspired Injectable Polyurethane Underwater Adhesive with Fast Bonding and Hemostatic Properties.

Not available

S-EPMC11040379 | biostudies-literature

Human lung adenocarcinoma DNA methylation profiling by MSNP

Lung adenocarcinoma’s genomic alterations exhibit vast variation. Lung adenocarcinoma also has previously described intrinsic gene expression subtypes (Hayes et al. 2006, PMID: 17075127). This study detect global methylation differences among gene expression subtypes. These specimens were also assay...

ORGANISM(S): Homo sapiens

2012-05-16 | E-GEOD-36438 | biostudies-arrayexpress

Nuclear phase retrieval spectroscopy using resonant x-ray scattering.

Not available

S-EPMC11958670 | biostudies-literature

Label-free quantitative proteomics of Drosophila melanogaster cells across different time points

This project involves a label-free quantitative proteomics analysis of Drosophila melanogaster using Data Independent Acquisition (DIA) mode on a Q-Exactive HF X mass spectrometer. The study includes 36 samples derived from glia cells (G) , S2 cells (S) and muscle cells (m).

ORGANISM(S): Drosophila melanogaster (Fruit fly)

2026-10-23 | PXD081430 | Pride

Dia Swath Q-exactive hf x Label-free quantification Drosophila melanogaster Glia

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19891 Results

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Organisms

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Disease

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