Sort   by:  
 Page size 
ProteomicsProteomics of zebrafish early somites
The segmented pattern of the vertebral column and musculature in vertebrate embryos is established during somitogenesis. Here, using the model animal zebrafish, we employed Data-Independent Acquisition (DIA) to capture the proteomics change at the early stages of somite development.
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2025-10-13 | PXD058516 | Pride
Somites Zebrafish 
ProteomicsIntegrin a5, aV, and aVb3 in zebrafish embryos at the 12 somite stage
Integrins are a major class of heterodimeric adhesion receptors composed of an a and b subunit that mediate cell adhesion to the extracellular matrix (ECM). The extracellular matrix protein fibronectin is important for early vertebrate development, and Integrin a5b1 and aVb3 are the two primary fibr...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) 
2021-09-10 | PXD024665 | Pride
Lc-msms Integrin 12 somite stage Zebrafish Extracellular matrix 
TranscriptomicsTranscription profiling by array of the paraxial mesoderm of zebrafish embryos - spatiotemporal analysis
Differentially expressed genes along the paraxial mesoderm of 12 somite stage zebrafish embryos are identified Tissue samples from 6 different spatial positions were dissected from wild-type (AB) embryos, RNA is amplified and hybridized to arrays
ORGANISM(S): Danio rerio 
2010-02-22 | E-GEOD-15796 | biostudies-arrayexpress
TranscriptomicsExpression analysis of zebrafish TIF1g-deficient, cdc73 deficient and double-deficient embryos
Investigation of whole genome gene expression level changes in zebrafish TIF1g-deficient, cdc73 deficient and double-deficient embryos, compared to the wild-type ebryos. A twelve-chip study using total RNA isolated from gata1-GFP positive cells (sorted by FACS) from 12 somite-stage wild type embryos...
ORGANISM(S): Danio rerio 
2010-07-13 | E-GEOD-20432 | biostudies-arrayexpress
GenomicsATAC-seq profile of zebrafish periderm at 4-somite stage
ATAC-seq profile of zebrafish periderm at 4-somite stage
PRJNA589033 | ENA
GenomicsmRNA profile of zebrafish periderm at 4-somite stage
mRNA profile of zebrafish periderm at 4-somite stage
PRJNA589032 | ENA
TranscriptomicsTranscription profiling of mouse Dll3 mutant vs. wild-type 9.5 dpc somite-level tissue
Delta-like 3 (Dll3) is a divergent ligand and modulator of the Notch signaling pathway only identified so far in mammals. Null mutations of Dll3 disrupt cycling expression of Notch targets Hes1, Hes5, and Lfng, but not of Hes7. Compared with Dll1 or Notch1, the effects of Dll3 mutations are less se...
ORGANISM(S): Mus musculus 
2009-03-14 | E-GEOD-15153 | biostudies-arrayexpress
TranscriptomicsBiological variation between zebrafish development series
Transcriptome analysis during embryogenesis usually requires pooling of embryos to obtain sufficient RNA. Hence, the measured levels of gene-expression represent the average mRNA levels of pooled samples and the biological variation among individuals is lost for inclusion into statistical models use...
ORGANISM(S): Danio rerio 
2010-04-01 | E-GEOD-17736 | biostudies-arrayexpress
TranscriptomicsTranscriptome-wide profiling of Spadetail-regulated genes in early somite progenitors
We integrate zebrafish embryology with photoactivatable caged morpholinos (cMO), the photoactivatable lineage tracer caged fluorescein-dextran (cFD), fluorescence-activated cell-sorting (FACS) and RNA sequencing (RNA-seq) to identify Spadetail-regulated genes in mesodermal cells enriched for early s...
ORGANISM(S): Danio rerio 
2016-06-27 | E-GEOD-70623 | biostudies-arrayexpress
UnknownThe ADAMTS5 Metzincin Regulates Zebrafish Somite Differentiation.
Not available
S-EPMC5877627 | biostudies-literature
Sort   by:  
 Page size