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ProteomicsProteome profiling of PMJ2-R and primary peritoneal macrophages
In vitro models are often used to study the functions of macrophages, including the process of phagocytosis. The use of primary macrophages has limitations associated with the individual characteristics of animals, which can lead to insufficient standardization of the results obtained. This disadvan...
ORGANISM(S): Mus musculus (Mouse) 
2021-07-12 | PXD022133 | Pride
Peritoneal macrophages Phagocytosis Pmj2-r Proteome Lc-ms/ms 
ProteomicsComparative shotgun proteomics of aqueous humor for cataract, glaucoma and pseudoexfoliation eye disorders.
The aim of this work was to characterize proteome of aqueous humor from subjects with various eye conditions such as cataract, glaucoma and pseudoexfoliation syndrome by high-resolution chromate-mass-spectrometry. Twenty nine human aqueous humor samples were processed by shotgun proteomics. Data was...
ORGANISM(S): Homo sapiens (Human) 
2016-05-23 | PXD002623 | Pride
Glaucoma Pseudoexfoliation syndrome Mass spectrometry Aqueous humor Eye disease Cataract Proteomics 
ProteomicsProteome of Schistocephalus solidus (Cestoda) after short- and long-term heating
The protein composition of the cestode Schistocephalus solidus was measured in an experiment simulating the transition of the parasite from a cold-blooded to a warm-blooded host. Infective S. solidus plerocercoids obtained from the three-spined stickleback Gasterosteus aculeatus were heated at 40 °C...
ORGANISM(S): Schistocephalus solidus 
2022-02-16 | PXD024166 | Pride
Schistocephalus solidus  proteome  parasite  host-parasite interaction  cestoda  plerocercoid 
ProteomicsExome-based proteogenomics of HEK-293 human cell line: coding genomic variants identified at the level of shotgun proteome
Genomic and proteomic data were integrated into the proteogenomic workflow to identify coding genomic variants of Human Embryonic Kidney 293 (HEK-293) standard cell line at the proteome level. Shotgun proteome data published by Geiger et al (2012) and obtained in this work for HEK-293 were searched ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-03-28 | MSV000080712 | MassIVE
ProteomicsProteogenomics of adenosine-to-inosine RNA editing in fruit fly
This dataset is a part of a bigger work on RNA editing in D. melanogaster brain. We present Orbitrap spectra searched against a customized database of Drosophila proteome with introduction of variants provided by RNA editing. Three files reflect 3 technical replicates.
ORGANISM(S): Drosophila melanogaster (Fruit fly) 
2018-10-25 | PXD009590 | Pride
Rna editing Proteogenomics Drosophila melanogaster 
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