Zhang Chen C - OmicsDI

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Unknown (37894)
Proteomics (997)
Transcriptomics (463)
Metabolomics (158)
Genomics (121)
Multiomics (6)
Models (4)
Other (3)

Organisms

Homo sapiens (497)
Mus musculus (199)
Arabidopsis thaliana (21)
Rattus norvegicus (17)
Zea mays (14)
Oryza sativa (14)
Drosophila melanogaster (12)
Sus scrofa (7)
Macaca mulatta (6)
Caenorhabditis elegans (6)
Saccharomyces cerevisiae (6)
Oryza sativa Indica Group (5)
Glycine max (5)
Populus simonii (4)
Bombyx mori (4)
Oryza sativa Japonica Group (4)
Gallus gallus (4)
Ovis aries (3)
Danio rerio (3)
Mayetiola destructor (2)
mouse gut metagenome (2)
Apis mellifera (2)
Clostridioides difficile 630 (1)
Acipenser schrenckii (1)
Iridovirus (1)
Spalax carmeli (1)
Coccinella septempunctata (1)
Lonicera japonica (1)
Epinephelus coioides (1)
Larimichthys crocea (1)

Organisms

Arabidopsis thaliana (1)
Mus musculus (1)
Homo sapiens (1)

Repository

pride (569)
biostudies-arrayexpress (519)
iProX (356)
MetaboLights (154)
EGA (61)
MassIVE (41)
PeptideAtlas (27)
GNPS (4)
ENA (4)
BioModels (3)
GPMDB (3)
jPOST (2)
Cell Collective (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (155)
Epithelial cell (42)
Liver (26)
Leaf (25)
Plasma Non-glyco (22)
Blood plasma (20)
Brain (20)
Testis (20)
Plant cell (18)
Permanent cell line cell (15)
Blood serum (14)
Lung (13)
B cell (12)
Heart (12)
Blood cell (10)
Kidney (10)
Hepatocyte (9)
Oocyte (9)
T cell (9)
Whole body (9)
Early embryonic cell (8)
Embryo (8)
Lymph node (7)
Spleen (7)
Stem cell (7)
Cell suspension culture (6)
Colon (6)
Embryonic stem cell (6)
Others (3)
Male Reproductive System (2)

Disease

Disease free (23)
Breast cancer (14)
Colon cancer (11)
Cervix carcinoma (8)
Acute leukemia (7)
Prostate adenocarcinoma (5)
Brain glioblastoma multiforme (4)
Hepatocellular carcinoma (4)
Lymphoma (4)
Type 2 diabetes mellitus (4)
Not Available (3)
Brain cancer (3)
Malignant neoplasm of ovary (3)
Renal cell carcinoma (3)
Wounds and Injuries (3)
Cardiovascular system disease (2)
Hepatitis B (2)
Liver carcinoma (2)
Melanoma (2)
Non-small cell lung carcinoma (2)
Pancreatic carcinoma (2)
Severe acute respiratory syndrome (2)
HPV positive (1)
Endometrioid carcinoma (1)
Pancreatic tumor (1)
Normal (1)
Alzheimer's disease 3 (1)
Burkitt lymphoma (1)
Coronavirus infectious disease (1)
Cryptococcal meningitis (1)

Technology Type

Mass Spectrometry (569)
Shotgun proteomics (335)
Mass spectrometry (133)
Bottom-up proteomics (57)
Affinity purification coupled with mass spectrometry proteomics (53)
Gel-based experiment (38)
Data-dependent acquisition (37)
Top-down proteomics (33)
Mass spectrometry assay (19)
Data-independent acquisition (17)
SWATH MS (16)
Chemical cross-linking coupled with mass spectrometry proteomics (12)
Proteogenomics (6)
Illumina HiSeq 2000 (5)
MSE (3)
SRM/MRM (3)
Illumina HiSeq 2500 (2)
NMR spectroscopy (2)
All-ion fragmentation (2)
HDMSE (2)
Mass spectrometry imaging (2)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, unknown (1)
Affinity proteomics (1)
DiaPASEF (1)
RNA mass spectrometry (1)

Instrument Platform

LTQ Orbitrap Velos (17)
Q Exactive (13)
Illumina HiSeq 2000 (11)
Illumina NovaSeq 6000 (9)
LTQ Orbitrap Elite (9)
Illumina HiSeq 2500 (7)
Illumina HiSeq 4000 (5)
Q Exactive HF (5)
Orbitrap Fusion Lumos (4)
Instrument (3)
LTQ Orbitrap (3)
BGISEQ-500 (2)
Illumina MiSeq (2)
TripleTOF 6600 (2)
LTQ (2)
Orbitrap Exploris 480 (2)
Q Exactive HF-X (2)
BD FACSAria™ III (1)
BGIseq500 (1)
Illumina Genome Analyzer IIx (1)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 1000 (1)
HiSeq X Ten (1)
NextSeq 550 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
LTQ Orbitrap Discovery (1)
Orbitrap Eclipse (1)
Orbitrap Fusion ETD (1)

Publication Date

2022 (164)
2025 (142)
2023 (127)
2021 (127)
2015 (113)
2014 (109)
2024 (107)
2020 (84)
2019 (80)
2012 (71)
2010 (64)
2013 (61)
2016 (57)
2026 (50)
2017 (50)
2018 (48)
2011 (42)
2009 (15)
2008 (12)
2007 (8)
2006 (5)
2005 (4)
2004 (1)

UNIPROT ID/AC

14331_SOLTU (1)
14332_SOLTU (1)
14335_SOLTU (1)
4113.PGSC0003DMT400001418 (1)
4113.PGSC0003DMT400002078 (1)
4113.PGSC0003DMT400003947 (1)
4113.PGSC0003DMT400005135 (1)
4113.PGSC0003DMT400005136 (1)
4113.PGSC0003DMT400005427 (1)
4113.PGSC0003DMT400009647 (1)
4113.PGSC0003DMT400009751 (1)
4113.PGSC0003DMT400013958 (1)
4113.PGSC0003DMT400015957 (1)
4113.PGSC0003DMT400016201 (1)
4113.PGSC0003DMT400022438 (1)
4113.PGSC0003DMT400027147 (1)
4113.PGSC0003DMT400027379 (1)
4113.PGSC0003DMT400029003 (1)
4113.PGSC0003DMT400031900 (1)
4113.PGSC0003DMT400034164 (1)
4113.PGSC0003DMT400034190 (1)
4113.PGSC0003DMT400035006 (1)
4113.PGSC0003DMT400035007 (1)
4113.PGSC0003DMT400038109 (1)
4113.PGSC0003DMT400040121 (1)
4113.PGSC0003DMT400040171 (1)
4113.PGSC0003DMT400040182 (1)
4113.PGSC0003DMT400041662 (1)
4113.PGSC0003DMT400043254 (1)
4113.PGSC0003DMT400045338 (1)

ENSEMBL ID

ENSG00000170477 (25)
ENSG00000147251 (9)
ENSG00000247315 (9)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17895 (46)
CHEBI:17368 (45)
CHEBI:16335 (44)
CHEBI:17596 (44)
CHEBI:16704 (43)
CHEBI:30769 (43)
CHEBI:16708 (41)
CHEBI:16750 (41)
CHEBI:17568 (41)
CHEBI:15756 (41)
CHEBI:17154 (40)
CHEBI:15741 (39)
CHEBI:17295 (39)
CHEBI:16235 (36)
CHEBI:16919 (36)
CHEBI:17562 (35)
CHEBI:15891 (35)
CHEBI:16015 (35)
CHEBI:16828 (35)
CHEBI:17821 (34)
CHEBI:16196 (34)
CHEBI:17509 (34)
CHEBI:7916 (34)
CHEBI:15971 (34)
CHEBI:16737 (34)
CHEBI:16040 (33)
CHEBI:28842 (33)
CHEBI:17203 (33)
CHEBI:15354 (33)
CHEBI:55328 (32)

Metabolite Name

Adenosine (37)
Creatine (35)
Hypoxanthine (35)
Uridine (34)
Uracil (33)
Adenine (33)
L-Tyrosine (33)
Inosine (31)
Creatinine (29)
Thymine (28)
L-Histidine (28)
Guanine (28)
Cytidine (28)
Guanosine (28)
L-Phenylalanine (28)
L-Arginine (27)
Cytosine (27)
Palmitic acid (27)
Choline (25)
Taurine (25)
Citric acid (25)
L-Glutamine (25)
L-Methionine (25)
Indole (24)
L-Tryptophan (24)
Uric acid (24)
Succinic acid (23)
Spermidine (23)
Xanthine (23)
L-Valine (23)

First Public Date

2023 (1)
2022 (1)
2018 (1)
2014 (1)

Modelling Approach

Other (1)
Ordinary differential equation model (1)
Constraint-based model (1)

Lab affiliation

Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (5)
Agronomy College, Henan Agricultural University, China (4)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (4)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (4)
Laboratory of Microbiology Oceanography, State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, School of Oceanography, Shanghai JiaoTong University (4)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (3)
Institute of Biophysics, Chinese Academy of Sciences (3)
Nanjing Medical University (3)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (3)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (3)
Shanghaitech University (3)
Shenyang Agricultural University (3)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (3)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (2)
Agronomy College/National Key Laboratory of Wheat and Corn Crop/Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University ,Zhengzhou China (2)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Harbin 150040, China (2)
Army Medical University (Third Military Medical University) (2)
Beijing Friendship Hospital, Capital Medical University (2)
College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China (2)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
College of Horticulture, Hunan Agricultural University (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (2)
Department of Biochemistry and Department of Metabolic Medicine of the Fourth Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Department of Chemical & Systems Biology, Stanford University, USA (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

Machine Learning Model (1)

Modification

2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (249)
RNA-seq of coding RNA (114)
ChIP-seq (27)
RNA-seq of non coding RNA (27)
Methylation profiling by high throughput sequencing (22)
Comparative genomic hybridization by array (21)
Unknown experiment type (9)
Methylation profiling by array (9)
Other (7)
DNA-seq (7)
Transcription profiling by RT-PCR (6)
RNA-seq of coding RNA from single cells (6)
RNA-seq of total RNA (5)
ChIP-chip by array (2)
Genotyping by array (2)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
4C (1)
ATAC-seq (1)
Hi-C (1)

Release Date

2025 (6051)
2022 (5343)
2023 (4792)
2024 (4676)
2021 (4021)
2020 (2965)
2019 (2022)
2018 (1757)
2017 (1380)
2016 (1191)
2015 (993)
2026 (854)
2014 (745)
2013 (464)
2012 (365)
2011 (263)
2010 (207)
2009 (110)
2008 (92)
2006 (40)
2007 (36)
2005 (18)
2004 (13)
2002 (6)
2003 (5)
2001 (1)
2000 (1)
1999 (1)

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Expression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant

Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...

ORGANISM(S): Streptomyces avermitilis

2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Metabolome and transcriptomics analyses reveal quality differences between Camellia tachangensis F. C. Zhang and C. sinensis (L.) O. Kunzte.

Not available

S-EPMC11620563 | biostudies-literature

Carboxypeptidase B-assisted charge-based fractional diagonal chromatography for deep screening of C-terminome

The determination of protein C-termini is of great significance for protein function annotation and proteolysis re-search. However, the progress of C-terminomics is still far behind its counterpart, N-terminomics, because of the low reactivity of the carboxyl group. Herein, we developed a negative s...

ORGANISM(S): Homo sapiens (Human) Escherichia coli

2020-05-25 | PXD018520 | Pride