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TranscriptomicsSorghum nitrogen stress tolerance
Sorghum is an important cereal crop, which requires large quantities of nitrogen fertilizer for achieving commercial yields. Identification of the genes responsible for low-N tolerance in sorghum will facilitate understanding of the molecular mechanisms of low-N tolerance, and also facilitate the ge...
ORGANISM(S): Sorghum bicolor 
2014-05-01 | E-GEOD-54705 | biostudies-arrayexpress
TranscriptomicsMapping origins of replication in Arabidopsis thaliana: H4K5ac ChIP vs. unmodified H3 ChIP
Genomic integrity requires faithful chromosome duplication. Origins of replication are the genomic sites where DNA replication initiates in every cell cycle. There are multiple origins scattered throughout the eukaryotic genome whose genome-wide identification has been a hard challenge, especially i...
ORGANISM(S): Arabidopsis thaliana 
2011-11-06 | E-GEOD-21827 | biostudies-arrayexpress
TranscriptomicsIntegrated omics studies delineate the formation and dynamics of lipid droplets in Rhodococcus opacus PD630 for biofuel feedstock
Purpose: To delineate mechanisms underlying lipid storage in LDs, we compared the transcriptomes of cells cultivated under three lipid-accumulating conditions. Methods: PD630 mRNA profiles of 3 different conditions (normal condition and LDs acculation conditions) were generated by deep sequencing, u...
ORGANISM(S): Rhodococcus opacus 
2013-11-04 | E-GEOD-42381 | biostudies-arrayexpress
MetabolomicsExogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights
TranscriptomicsMapping origins of replication in Arabidopsis thaliana
Genomic integrity requires faithful chromosome duplication. Origins of replication are the genomic sites where DNA replication initiates in every cell cycle. There are multiple origins scattered throughout the eukaryotic genome whose genome-wide identification has been a hard challenge, especially i...
ORGANISM(S): Arabidopsis thaliana 
2011-02-06 | E-GEOD-21828 | biostudies-arrayexpress
UnknownEffect of education on endometriosis and mediating effects: a mendelian randomization study.
Not available
S-EPMC12414883 | biostudies-literature
TranscriptomicsDefining the Roles and Regulation of the GATA-factor ELT-2 in the C. elegans Endoderm
We identified genome-wide sites of occupancy for the intestine-specific transcription factor ELT-2 in L3-staged N2 worm by performing ELT-2 ChIP-seq on whole worms; we performed RNA-seq on L3-staged N2 whole worms To identify DNA regions of direct ELT-2 occupancy, we performed the following ChIP-seq...
ORGANISM(S): Caenorhabditis elegans 
2016-03-30 | E-GEOD-71720 | biostudies-arrayexpress
UnknownBioinformatics and Expression Analysis of CHI Gene Family in Sweet Potato.
Not available
S-EPMC11902207 | biostudies-literature
TranscriptomicsChIP-chip analysis of HTZ-1 and RNA Polymerase II in wildtype (N2) embryos
In all eukaryotes, histone variants are incorporated into a subset of nucleosomes to create functionally specialized regions of chromatin. One such variant, H2A.Z, replaces histone H2A and is required for viability in all metazoans tested to date. However, the function of H2A.Z in chromatin organiza...
ORGANISM(S): Caenorhabditis elegans 
2010-05-25 | E-GEOD-10201 | biostudies-arrayexpress
UnknownEffectiveness of Tai Chi exercise on balance, falls, and motor function in older adults: a meta-analysis.
Not available
S-EPMC11573509 | biostudies-literature
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