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TranscriptomicsTranscriptome wt vs mdxR mutant in E. faecium E1162 grown in M1 with maltose
Comparative transcriptome analysis of E. faecium E1162 and its isogenic mdxR deletion mutant during growth in M1 with maltose in mid-exponential phase (A660 = 0.3)
ORGANISM(S): Enterococcus faecium 
2013-10-09 | E-MEXP-3759 | biostudies-arrayexpress
TranscriptomicsAIN-2::GFP IP of mRNAs associated with miRISC in stage sychronized C. elegans populations
AIN-2::GFP IP were used to purify miRISC from stage sychronized C.elegans populations (Egg, L1, L2, L3 and L4 stages). The mRNA composition of the IP results and the corresponding total RNA samples were analyzed by WUSTL Caenorhabditis elegans Whole Genome 23k Oligo Array. The miRISC associated mRNA...
ORGANISM(S): Caenorhabditis elegans 
2009-05-21 | E-GEOD-16208 | biostudies-arrayexpress
TranscriptomicsTranscriptome wt vs mdxR mutant in E. faecium E1162 grown in BHI
Comparative transcriptome analysis of E. faecium E1162 and its isogenic mdxR deletion mutant during growth in BHI in mid-exponential phase (A660 = 0.3)
ORGANISM(S): Enterococcus faecium 
2013-10-09 | E-MEXP-3760 | biostudies-arrayexpress
TranscriptomicsM-TraM E.faecium BHI and BHI with bile salts
A genome-wide identification of the genetic loci required for bile salts resistance in E. faecium
ORGANISM(S): Enterococcus faecium 
2013-10-10 | E-MEXP-3797 | biostudies-arrayexpress
TranscriptomicsTranscriptome of E.faecium E1162 under bile salts activation
This experiment is to investigate E.faecium E1162 transcriptome profiles under bile salts activation.
ORGANISM(S): Enterococcus faecium 
2013-10-10 | E-MEXP-3796 | biostudies-arrayexpress
TranscriptomicsDynamics of gene expression changes in epithelial and mesenchymal HMLER cell lines transitioning from suspension 3D culture to adhesion cultures
In order to metastasize, few cells need to detach from the primary tumor, and transition through the circulation to distant sites to establish new solid tumor metastases. The gene expression changes occurring between these transitions are poorly understood, and controversial findings have been repor...
ORGANISM(S): Homo sapiens 
2015-07-10 | E-GEOD-70279 | biostudies-arrayexpress
TranscriptomicsEffect of furfural on the Clostridium beijerinckii NCIMB 8052 transcriptome
Furfural is the prevalent microbial inhibitor generated during pretreatment and hydrolysis of lignocellulosic biomass to monomeric sugars, but the molecular response of Clostridium beijerinckii NCIMB 8052 to this compound is unknown. To discern the effect of furfural on C. beijerinckii and to gain ...
ORGANISM(S): Clostridium beijerinckii NCIMB 8052 
2012-12-06 | E-GEOD-42597 | biostudies-arrayexpress
GenomicsGenome-wide identification of bZIP29 target genes in Arabidopsis cell cultures
The Arabidopsis basic leucine zipper transcription factor bZIP29 of the bZIP group I TF family, expressed mainly in proliferative tissues, is functionally characterized in this study. Genes bound by bZIP29 were mapped genome-wide using a tandem ChIP procedure (TChAP) on cell cultures expressing the ...
ORGANISM(S): Arabidopsis thaliana 
2017-05-13 | E-MTAB-3754 | biostudies-arrayexpress
TranscriptomicsImpact of library preparation on downstream analysis and interpretation of RNA-seq data: comparison between Illumina PolyA and NuGEN Ovation protocol
Objectives: The sequencing by the PolyA selection is the most common approach for library preparation. With limited amount or degraded RNA, alternative protocols such as the NuGEN have been developed. However, it is not yet clear how the different library preparations affect the downstream analyses ...
ORGANISM(S): Homo sapiens 
2013-08-28 | E-GEOD-47933 | biostudies-arrayexpress
TranscriptomicsSystematic Analysis of Tissue-Restricted miRISCs Reveals a Broad Role for microRNAs in Suppressing Basal Activation of the C. elegans Pathogen Response
Gene regulation by microRNAs (miRNAs) under specific physiological conditions often involves complex interactions between multiple miRNAs and a large number of their targets, as well as coordination with other regulatory mechanisms, limiting the effectiveness of classical genetic methods to identify...
ORGANISM(S): Caenorhabditis elegans 
2012-03-23 | E-GEOD-36419 | biostudies-arrayexpress
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