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TranscriptomicsExpression analysis of Streptomyces avermitilis NRRL8165 delta-aveI mutant
Investigation of whole genome gene expression level changes in Streptomyces avermitilis delta-aveI mutant, compared to the wild-type strain. The mutants analyzed in this study are further described in Chen L, Lu Y., Chen J, Zhang W, Shu D, Qin Z, Yang S, Jiang W. (2008) Characterization of a negativ...
ORGANISM(S): Streptomyces avermitilis 
2010-05-16 | E-GEOD-16892 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of Desulfovibrio vulgaris during the change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism
Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism
ORGANISM(S): Desulfovibrio vulgaris 
2010-07-03 | E-MTAB-304 | biostudies-arrayexpress
ProteomicsA transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803
To improve ethanol production directly from CO2 in photosynthetic cyanobacterial systems, one key issue that needs to be addressed is the low ethanol tolerance of cyanobacterial cells. Our previous proteomic and transcriptomic analyses found that several regulatory proteins were up regulated by exog...
ORGANISM(S): Synechocystis sp. PCC 6803 
2014-09-26 | PXD001266 | Pride
Transcriptional regulator  ethanol  tolerance  synechocystis 
UnknownMultiomics Integration Reveals the Landscape of Prometastasis Metabolism in Hepatocellular Carcinoma.
Not available
S-EPMC5880115 | biostudies-literature
ProteomicsRewiring the metabolic network to increase docosahexaenoic acid productivity in Crypthecodinium cohnii by fermentation supernatant-based adaptive laboratory evolution
To overcome the inhibition caused by the fermentation supernatant in the late fermentation stage of docosahexaenoic acid (DHA)-producing Crypthecodinium cohnii, fermentation supernatant-based adaptive laboratory evolution (FS-ALE) was conducted. The cell growth and DHA productivity of the evolved st...
ORGANISM(S): Crypthecodinium Cohnii 
2021-11-27 | PXD030028 |
ProteomicsProteomic analyses reveal metabolic responses to 3-hydroxypropionic acid synthesized internally in Synechocystis sp. PCC 6803
Using an engineered 3-HP producing SM strain, in this project, the cellular responses to 3-HP internally produced were first determined using a quantitative iTRAQ-LC-MS/MS proteomics approach. A total of 2,264 unique proteins were identified, which represented about 63% of all predicted protein in S...
ORGANISM(S): Synechococcus cyanophage syn 
2016-09-26 | PXD004974 | Pride
Synechocystis 3-hp Proteomics 
OtherA transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803.
Data from ProteomeXchange, PXD ID: PXD001266. File: zao-07.mgf. Published as part of Mol Cell Proteomics. 2014 Sep 19 . From the Abstract: {{i}} To improve ethanol production directly from CO2 in photosynthetic cyanobacterial systems, one key issue that needs to be addressed is the low ethanol tole...
ORGANISM(S): Synechococcus_phage_p60_uid14628,synechococcus_phage_syn5_uid19763,synechococcus_phage_syn9_uid17541,synechococcus_phage_s_pm2_uid15223,synechococcus_phage_s_rsm4_uid39923, Synechocystis_sp_pcc_6803 
GPM32310004118 | GPMDB
Resource Reanalysis 
ProteomicsItraq-base proteomics analysis of ONFH tissues exosomes
The differentially expressed proteins in ONFH tissues exosomes were analyzed using itraq-based proteomics technology
ORGANISM(S): Homo Sapiens 
2020-03-21 | PXD018149 |
TranscriptomicsErbB2 Pathway Activation upon Smad4 Loss Promotes Lung Tumor Growth and Metastasis [expression]
Lung cancer remains the leading cause of cancer death. Genome sequencing of lung tumors from patients with Squamous Cell Carcinoma has identified SMAD4 to be frequently mutated. Here we used a novel mouse model to determine the molecular mechanisms regulated by loss of Smad4 which lead to lung cance...
ORGANISM(S): Mus musculus 
2015-03-05 | E-GEOD-57133 | biostudies-arrayexpress
TranscriptomicsComparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018
Transcriptomic profiling of gene expression in EA 2018 relative to that of ATCC824 revealed several key genes related to solvent formation. For example, spo0A and adhEII have higher expression level, and most of the acid formation related genes have lower expression level in EA 2018. Cells for RNA ...
ORGANISM(S): Clostridium acetobutylicum EA 2018 
2012-07-22 | E-GEOD-23071 | biostudies-arrayexpress
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