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ProteomicsIdentifing YdeH acetylation sites
we found the E. coli major DGC, YdeH, is endogenously acetylated and CobB promotes YdeH activity through deacetylation of YdeH. This experiment will identify the sites that can be acetylated by CobB on YdeH.
ORGANISM(S): Escherichia coli 
2019-06-17 | PXD008113 | Pride
Acetylation Q exactive Ydeh 
ProteomicsIdentifying protein acetylation
Five proteins, YdeH, Era, YegE, YeaJ and YihK were mixed and performed the Q Exactive MS analysis to identify the protien acetylation sites.
ORGANISM(S): Escherichia coli 
2019-06-17 | PXD007651 | Pride
Acetylation Q exactive 
ProteomicsSILAC labeling efficiency for c-di-GMP and CobB
Description To determine whether c-di-GMP could affect CobB-dependent deacetylation in a global setting, we applied Stable Isotope Labeling with Amino acids in Cell culture (SILAC) coupled with MS to quantitatively compare the levels of protein acetylation in WT, ΔcobB and ΔdgcZ cells. Before that, ...
ORGANISM(S): Escherichia coli 
2019-06-24 | PXD014344 | Pride
Silac c-di-gmp 
ProteomicsProtein Deacetylase CobB Interplays with c-di-GMP
As a ubiquitous bacterial secondary messenger, c-di-GMP plays key regulatory roles in processes like bacterial motility and transcription regulation. We found that c-di-GMP had impact on lysine acetylation level. To further investigate the regulation role, we performed a quantitative analysis of E. ...
ORGANISM(S): Escherichia coli 
2019-06-17 | PXD010558 | Pride
C-di-gmp Ydeh Acetylation 
UnknownHigh-speed blind structured illumination microscopy via unsupervised algorithm unrolling.
Not available
S-EPMC12932644 | biostudies-literature
UnknownMetamaterial assisted illumination nanoscopy via random super-resolution speckles.
Not available
S-EPMC7946936 | biostudies-literature
UnknownMicro-droplet Digital Polymerase Chain Reaction and Real-Time Quantitative Polymerase Chain Reaction Technologies Provide Highly Sensitive and Accurate Detection of Zika Virus.
Not available
S-EPMC6178550 | biostudies-literature
Proteomicsc-di-GMP affect the protein acetylation through CobB dependent deacetylation
To determine whether c-di-GMP could affect CobB-dependent deacetylation in a global setting, we applied Stable Isotope Labeling with Amino acids in Cell culture (SILAC) coupled with MS to quantitatively compare the levels of protein acetylation in WT, ΔcobB and ΔdgcZ cells.
ORGANISM(S): Escherichia coli 
2019-06-17 | PXD013292 | Pride
C-di-gmp cobb 
ProteomicsGel-Assisted Proteome Position Integral Shift (GAPPIS) Assay Returns Molecular Weight to Shotgun Proteomics and Identifies Novel Caspase 3 Substrates
Here we present a high-throughput virtual top-down proteomics approach that restores the molecular weight (MW) information in shotgun proteomics, and demonstrate its utility in studying proteolytic events in programmed cell death. With Gel-Assisted Proteome Position Integral Shift (GAPPIS), we quant...
ORGANISM(S): Homo sapiens (Human) 
2025-03-11 | PXD049007 | Pride
Molecular weight，shotgun proteomics，mass spectrometry Caspase 3 Gel electrophoresis 
UnknownSPEED-TR: a self-distilled and pre-trained transformer model for enhanced ECG detection of tricuspid regurgitation.
Not available
S-EPMC12612177 | biostudies-literature
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