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UnknownWhole-Transcriptome Profiling and Functional Prediction of Long Non-Coding RNAs Associated with Cold Tolerance in Japonica Rice Varieties.
Not available
S-EPMC10889138 | biostudies-literature
TranscriptomicsAnalysis of the RDR6-dependent ein5 ski2 profile in Arabidopsis
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2015-04-15 | E-GEOD-52409 | biostudies-arrayexpress
TranscriptomicsAnalysis of the RDR6-dependent small RNA profile in ein5 ski2 in Arabidopsis with biological replications and increased sequencing depth
Post-transcriptional gene silence (PTGS) is employed in plants to shut down transgenes, invading viral genes and a certain group of endogenous genes. Meanwhile, it is not clear how the risk of expansive PTGS from endogenous genes featured by transitive siRNA production is minimized. Here we demonstr...
ORGANISM(S): Arabidopsis thaliana 
2015-04-13 | E-GEOD-57936 | biostudies-arrayexpress
ProteomicsComparative Evaluation of Five Protocols for Protein Extraction from Stony Corals (Scleractinia) for Proteomics
Corals especially the reef-building species are very important to marine ecosystems. Proteomics has been used for researches on coral diseases, bleaching and responses to the environment change. Corals especially the reef-building species are very important to marine ecosystems. Proteomics has been ...
ORGANISM(S): Exaiptasia pallida Nematostella vectensis Chromera velia Acropora digitifera 
2022-07-24 | PXD006334 | Pride
Corals  protein extraction  proteomics  two dimensional electrophoresis (2-de)  maldi-tof-ms 
TranscriptomicsAnalysis of the RDR6-dependent ein5 ski2 transcriptome profile in Arabidopsis
Post-transcriptional gene silence (PTGS) is employed in plants to shut down transgenes, invading viral genes and a certain group of endogenous genes. Meanwhile, it is not clear how the risk of expansive PTGS from endogenous genes featured by transitive siRNA production is minimized. Here we demonstr...
ORGANISM(S): Arabidopsis thaliana 
2015-04-13 | E-GEOD-52407 | biostudies-arrayexpress
TranscriptomicsProfiling of Argonaute (AGO) 2-associated sRNAs after infection of bacterial pathogen Pseudomonas syringae
Transgenic Arabidopsis plants (AGO2::HA:AGO2) were treated with either mock (10 mM MgCl2) or Pseudomonas syringae pv. tomato (Pst) expressing avrRpt2 (R2) at a concentration of 2 x 107 cfu/ml for 14 hours. sRNAs associated with AGO1 and AGO2 were co-immunoprecipitated using antibodies against either...
ORGANISM(S): Arabidopsis thaliana 
2011-05-10 | E-GEOD-26161 | biostudies-arrayexpress
TranscriptomicsPseudopodoces humilis Transcriptome data used for gene annotation
To optimize the genome annotation, two tissue RNA libraries (i.e. liver and muscle) were constructed using the Illumina mRNA-Seq Prep Kit This study is a part of the Pseudopodoces humilis WGS project (BioProject ID: PRJNA179234) and was used for gene annotation improvement. We sequenced two tissues ...
ORGANISM(S): Pseudopodoces humilis 
2013-11-29 | E-GEOD-44779 | biostudies-arrayexpress
ProteomicsHuman hepatocellular carcinoma MHCC97H proteome
In this work, we generated a MHCC97H proteome datasets by In-gel digestion on Orbitrap Fusion Lumos. We systematically compared RNC-seq and Ribo-seq in the context of proteome identification, especially when identifying protein isoforms from AS. We also demonstrated that the single-molecule long rea...
ORGANISM(S): Homo sapiens (Human) 
2022-06-28 | PXD032201 | Pride
Human In-gel digestion Liver Mhcc97h Lc-ms/ms 
UnknownLncRNA Airn maintains LSEC differentiation to alleviate liver fibrosis via the KLF2-eNOS-sGC pathway.
Not available
S-EPMC9520944 | biostudies-literature
ProteomicsProteomes of Spirodela polyhriza under different trophic modes
The greater duckweed (Spirodela polyrhiza 7498) exhibits trophic diversity (photoautotrophic, heterotrophic, photoheterotrophic, and mixotrophic growth) depending on the availability of exogenous organic carbon sources and light. Here, we show that the ability to transition between various trophic g...
ORGANISM(S): Spirodela Polyrhiza 
2023-02-27 | PXD040410 |
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