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ProteomicsMS for identifying CENP-E ubiquitination sites and MS for GST-Ub4 interacting proteins
LUBAC mediates the linear ubiquitination of CENP-E and facilitates the anchoring of CENP-E by KNL1 at attached kinetochores
ORGANISM(S): Homo sapiens (Human) 
2019-01-28 | PXD011786 | Pride
Cenp-e Knl1 
ProteomicsE. coli proteome under nutrient limitation
This project is about the proteome of E. coli NCM3722 under various nutrient conditions. Note that the organism name was mislabeled as O157.
ORGANISM(S): Escherichia coli O157 
2025-04-30 | PXD045784 | Pride
Nutrient limitation E. coli 
TranscriptomicsExpression data from knockdown of G9a in MDA-MB231 cells
G9a is an H3K9m2 methyltransferase, which is critical in controlling gene suppression and DNA methylation. We used microarray analysis to identify the target genes that are regulated by G9a in MDA-MB231 cells, in which E-cadherin is silenced. G9a expression was stably knocked-down in MDA-MB231 cells...
ORGANISM(S): Homo sapiens 
2012-01-07 | E-GEOD-34925 | biostudies-arrayexpress
TranscriptomicspH stress in Desulfovibrio vulgaris Hildenborough
Using data from microarray experiments, we investigated the effects of excess NaCl on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with pH10 pH to untreated cells at times of 0,120,240,30,60 min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2007-08-31 | E-GEOD-8197 | biostudies-arrayexpress
TranscriptomicsExpression data from hepatitis E virus inoculated PLC/PRF/5 cells
Hepatitis E virus (HEV) is an important causative pathogen of acute hepatitis. Because of the absence of an in vitro culture system for HEV, research has been greatly impeded. And interaction between HEV and host cells was mainly studied by tansfection/transinfection system, such as Adeno virus tran...
ORGANISM(S): Homo sapiens 
2014-01-01 | E-GEOD-53731 | biostudies-arrayexpress
Proteomicsstudy on the ppGpp-mediated stringent response of E. coli during nutrient downshift
There are three projects including AE155LQ, RE161LQ, RE235LQ. AE155LQ is about the proteomes of wild type cells (WT) and E. coli RelA* OE strain during exponential growth in glucose cAA medium. E1 & E2 corresponds to the wild type cells (two biological replicate samples) and E3 & E4 corresponds to R...
ORGANISM(S): Escherichia coli 
2023-01-26 | PXD035675 | Pride
Ppgpp  rela mutant  e. coli 
ProteomicsE. coli proteome under nutrient limitation
This project is about the proteome of E. coli NCM3722 under various nutrient conditions.
ORGANISM(S): Escherichia coli 
2025-04-30 | PXD057303 | Pride
Nutrient limitation V. natriegens 
TranscriptomicsEthanol stress response in Desulfovibrio vulgaris
Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2010-06-24 | E-GEOD-7489 | biostudies-arrayexpress
TranscriptomicsCell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough
We investigated the effects of low level oxygen on Desulfovibrio vulgaris Hildenborough using microarrays. Keywords: time course, stress response Comparison of cells treated with 1000 ppm oxygen to untreated cells at 60,120,240 min.
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2010-06-10 | E-GEOD-7816 | biostudies-arrayexpress
TranscriptomicsAcetone stress response in Desulfovibrio vulgaris
Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress
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