Zhu He H - OmicsDI

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Unknown (4703)
Proteomics (200)
Transcriptomics (47)
Metabolomics (24)
Genomics (16)
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Models (1)

Organisms

Homo sapiens (95)
Allexis (90)
Arabidopsis thaliana (90)
Cyanophora paradoxa (90)
Ensifer adhaerens (90)
Entamoeba histolytica (90)
Mus musculus (19)
Arabidopsis thaliana (12)
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Saccharomyces cerevisiae (4)
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Oryza sativa Japonica Group (2)
Viridiplantae (1)
Rhodococcus opacus (1)
Hevea brasiliensis (1)
Shigella flexneri (1)
Bombyx mori (1)
Yarrowia lipolytica (1)
Clonorchis sinensis (1)
Streptomyces coelicolor A3(2) (1)
Oryza sativa (1)
Caenorhabditis elegans (1)
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Escherichia coli (1)
Ligilactobacillus salivarius (1)
Locusta migratoria (1)
Pyricularia oryzae 70-15 (1)
Halobacterium salinarum NRC-1 (1)

Repository

pride (90)
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biostudies-arrayexpress (56)
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HCT-116 cell (1)

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Disease free (3)
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Brain ischemia (1)
COVID-19 (1)
Medullary thyroid carcinoma (1)
Non-small cell lung carcinoma (1)
Pancreatic carcinoma (1)
Severe acute respiratory syndrome (1)
Skin cancer (1)
Stomach cancer (1)
Stomach disease (1)
Thyroid cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (90)
Shotgun proteomics (50)
Mass spectrometry (20)
Bottom-up proteomics (11)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (6)
Gel-based experiment (5)
SRM/MRM (4)
SWATH MS (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Affinity proteomics (2)
All-ion fragmentation (2)
Data-independent acquisition (2)
DiaPASEF (2)
Olink affinity proteomics (2)
RNA mass spectrometry (2)
Top-down proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Proteogenomics (1)

Instrument Platform

Unknown (29)
LCQ DECA XP PLUS (15)
Liquid Chromatography MS - positive - reverse phase (11)
Liquid Chromatography MS - negative - reverse phase (9)
LCQ Classic (6)
LTQ (6)
Gas Chromatography MS - positive (3)
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Q Exactive HF (2)
TripleTOF 6600 (2)
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Micromass Q-ToF (2)
Illumina HiSeq 2000 (1)
Orbitrap Exploris 480 (1)
TimsTOF Pro (1)
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Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Bruker (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
QExactive (1)

Publication Date

2024 (25)
2022 (25)
2013 (23)
2025 (20)
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2020 (16)
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2023 (13)
2019 (13)
2014 (9)
2018 (8)
2016 (6)
2010 (6)
2012 (5)
2015 (4)
2011 (3)
2008 (3)
2017 (3)
2004 (3)
2009 (2)
2006 (2)
2007 (1)
2005 (1)
2002 (1)
2001 (1)

UNIPROT ID/AC

P31327 (41)
B4E3A4 (37)
P60709 (37)
P63261 (37)
P25705 (36)
A5A3E0 (35)
P06576 (35)
Q9BYX7 (33)
P04264 (32)
P68032 (32)
P68133 (32)
I3L4N8 (31)
P00367 (31)
P07477 (31)
P62736 (31)
P63267 (31)
P69891 (31)
P69892 (31)
P35908 (30)
P68363 (30)
Q13707 (30)
Q9BQE3 (30)
P02792 (29)
P05787 (29)
P0CG38 (29)
P13645 (29)
P49448 (29)
Q562R1 (29)
Q7Z794 (29)
P0CG39 (28)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000147251 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:30769 (9)
CHEBI:15354 (8)
CHEBI:16015 (7)
CHEBI:17596 (7)
CHEBI:16828 (7)
CHEBI:17351 (7)
CHEBI:28875 (6)
CHEBI:16196 (6)
CHEBI:17750 (6)
CHEBI:17203 (6)
CHEBI:18183 (6)
CHEBI:55328 (6)
CHEBI:15971 (6)
CHEBI:16704 (6)
CHEBI:16857 (6)
CHEBI:17895 (6)
CHEBI:17295 (6)
CHEBI:33508 (5)
CHEBI:16040 (5)
CHEBI:15428 (5)
CHEBI:15741 (5)
CHEBI:16393 (5)
CHEBI:16335 (5)
CHEBI:17568 (5)
CHEBI:16710 (1)
CHEBI:17050 (1)
CHEBI:43474 (1)
CHEBI:17363 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)

Metabolite Name

Citric acid (6)
Uric acid (5)
Kynurenic acid (4)
L-Arginine (4)
Palmitic acid (4)
Linoleic acid (4)
Uridine (4)
Creatinine (4)
Ethyl glucuronide (3)
Uracil (3)
L-proline (3)
L-histidine (3)
Melibiose (3)
Citrulline (3)
Gluconic acid (3)
Succinic acid (3)
L-lysine (3)
Cortisone (3)
Choline (3)
Fumaric acid (3)
L-serine (3)
Docosahexaenoic acid (3)
Arachidonic acid (3)
Traumatic acid (3)
Malic acid (3)
Adenosine (3)
Maltotriose (3)
L-methionine (3)
Adenine (3)
Sucrose (3)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
6x(2)H labeled dimethylated L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (27)
RNA-seq of coding RNA (16)
Methylation profiling by high throughput sequencing (7)
RNA-seq of non coding RNA (3)
ChIP-seq (2)
Transcription profiling by tiling array (1)

Release Date

2025 (771)
2024 (632)
2022 (623)
2023 (607)
2021 (488)
2020 (392)
2019 (234)
2018 (209)
2017 (171)
2016 (125)
2026 (117)
2015 (112)
2014 (80)
2013 (78)
2012 (42)
2011 (28)
2009 (15)
2008 (14)
2010 (11)
2005 (4)
2007 (3)
2006 (2)
2002 (1)

Lab affiliation

He JunJun (5)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Zhejiang University (3)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (2)
Department of Clinical Pharmacy, University of Michigan (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
The First Affiliated Hospital of Fujian Medical University (2)
Tongji University (2)
Westlake University (2)
1Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3Taikang Center for Life and Medical Sciences of Wuhan University (1)
1F, Bldg A, No.18 Science Park Road, Life Science Park, Changping District, Beijing 102206, P. R. China (1)
Anonymity for double-blind review (1)
Beijing proteome research center, Beijing, China (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Center for Proteomics and Metabolomics St. Jude Children's Research Hospital (1)
China-Japan Union Hospital of Jilin University (1)
College of Animal Science and Technology, Northwest A&F University, Yangling (1)
College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China (1)
College of Veterinary Medicine, Shanxi Agricultural University, Taigu, Shanxi Province 030801, People’s Republic China. (1)
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore, 117543 (1)
Department of General Practice, The Third Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University (1)
Department of Medicine, Weill Cornell Medicine, New York, NY, USA (1)
Department of Molecular, Cellular, and Developmental Biology Yale University (1)
Division of Digestive Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA (1)
Division of Endocrinology, Department of Internal Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China. (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)

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Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo, part 3

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2020-05-26 | PXD011828 | Pride

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo, part 4

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2020-05-26 | PXD011829 | Pride

Lc-ms Proteomic Itraq Spleen，toxoplasma gondii Pig

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2020-05-26 | PXD011816 | Pride

Lc-ms Toxoplasma gondii Liver Proteomic Itraq Pig

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo, part 2

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2020-05-26 | PXD011830 | Pride

Lc-ms Toxoplasma gondii Lung Proteomic Itraq Pig

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo, part 5

Proteomic analysis of multiple pig tissues reveals hundreds of Toxoplasma gondii responsive proteins that could participate in Toxoplasma gondii control in vivo

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2020-05-26 | PXD011831 | Pride

Brain.toxoplasma gondii Lc-ms Proteomic Itraq Pig

Based on the Metabolomic Approach the Energy Metabolism Responses of Oriental River Prawn Macrobrachium nipponense Hepatopancreas to Acute Hypoxia and Reoxygenation

Hypoxia represents a major physiological challenge for prawns and is a problem in aquaculture. Therefore, an understanding of the metabolic response mechanism of economically important prawn species to hypoxia and re-oxygenation is essential. However, little is known about the intrinsic mechanisms b...

2021-05-17 | MTBLS584 | MetaboLights

Sensitive Biomarker Analysis of Xue-Fu-Zhu-Yu Capsule for Patients with Qi Stagnation and Blood Stasis Pattern: A Nested Case-Control Study.

Not available

S-EPMC6885824 | biostudies-literature

Xue-Fu-Zhu-Yu capsule in the treatment of qi stagnation and blood stasis syndrome: a study protocol for a randomised controlled pilot and feasibility trial.

Not available

S-EPMC6151047 | biostudies-literature

Ligand-promoted alkylation of C(sp3)-H and C(sp2)-H bonds.

Not available

S-EPMC4183600 | biostudies-literature

Genomic features and regulatory roles of intermediate-size non-coding RNAs in Arabidopsis

Recent advances in genome-wide techniques allowed the identification of thousands of non-coding RNAs with various sizes in eukaryotes, some of which have further been shown to serve important functions in many biological processes. However, in model plant Arabidopsis, novel intermediate-sized ncRNAs...

ORGANISM(S): Arabidopsis thaliana

2014-01-20 | E-GEOD-44235 | biostudies-arrayexpress

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