Zhu Xiaoyu X - OmicsDI

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Proteomics (9)
Metabolomics (3)
Transcriptomics (1)
Unknown (1)

Organisms

Homo sapiens (5)
Alphavirus (3)
Anemia (3)
Archaea (3)
Bacteria (3)
Betaherpesvirinae (3)
Borrelia (3)
Clostridium perfringens (3)
Cowpox virus (3)
Cytomegalovirus (3)
Dengue virus (3)
EFO:0001352 (3)
Hepatitis B virus (3)
Human alphaherpesvirus 1 (3)
Human betaherpesvirus 5 (3)
Human immunodeficiency virus (3)
Influenza A virus (3)
Influenza C virus (3)
Japanese encephalitis virus group (3)
Listeria monocytogenes (3)
Mammarenavirus (3)
Miscanthus x giganteus (3)
Mus musculus (3)
Mycobacterium tuberculosis (3)
Oropouche virus (3)
Rattus (3)
Staphylococcus aureus (3)
Streptococcus pneumoniae (3)
Bombyx mori (1)
Oryza sativa (1)

Repository

iProX (6)
MetaboLights (3)
pride (3)
biostudies-arrayexpress (1)

Tissue

Cell culture (2)
Blood serum (1)
Epithelial cell (1)

Disease

Breast cancer (1)

Technology Type

Mass spectrometry (3)
Mass Spectrometry (3)
Shotgun proteomics (2)
Gel-based experiment (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2023 (4)
2024 (3)
2025 (2)
2010 (1)
2022 (1)
2020 (1)
2018 (1)

CHEBI ID

CHEBI:62207 (2)
CHEBI:17786 (2)
CHEBI:28044 (2)
CHEBI:17712 (2)
CHEBI:70976 (2)
CHEBI:18107 (2)
CHEBI:16704 (2)
CHEBI:16695 (2)
CHEBI:7916 (2)
CHEBI:17858 (2)
CHEBI:17596 (2)
CHEBI:16708 (2)
CHEBI:17568 (2)
CHEBI:15741 (2)
CHEBI:17015 (2)
CHEBI:16709 (2)
CHEBI:30915 (2)
CHEBI:16742 (2)
CHEBI:17533 (2)
CHEBI:16259 (2)
CHEBI:6650 (2)
CHEBI:16750 (2)
CHEBI:16856 (2)
CHEBI:16027 (2)
CHEBI:191976 (1)
CHEBI:197255 (1)
CHEBI:189015 (1)
CHEBI:197253 (1)
CHEBI:183553 (1)
CHEBI:185728 (1)

Metabolite Name

Orotic acid (2)
N-Acetylleucine (2)
Adenosine monophosphate (2)
Malic acid (2)
Xanthosine (2)
Inosine (2)
Adenine (2)
3-Methylxanthine (2)
N-Acetyl-L-phenylalanine (2)
Uridine (2)
Succinic acid (2)
5,7-Dihydroxy-4'-methoxy-8-C-prenylflavanone (1)
Luteolin 4'-methyl ether 7-(6''-malonylglucoside) (1)
Gibberellin A58 (1)
Isorhamnetin 3-(4'''-p-coumarylrobinobioside) (1)
6-Hydroxyenterodiol (1)
5,7-Dihydroxy-3-methoxy-4'-prenyloxyflavone (1)
5-methoxy-2,2-dimethyl-3,4-dihydro-2H-1-benzopyran-6-carboxylic acid (1)
Leptosin (1)
Ikarisoside C (1)
Longicaudatin (1)
Linderachalcone (1)
Gibberellin A97 (1)
Hispidulin 7-(6''-E-p-Coumaroylglucoside) (1)
Tricin 7-[feruloyl-(->2)-glucuronyl-(1->2)-glucuronide] (1)
6-endo-Hydroxyfenchone (1)
4,2',4'-Trihydroxy-3-methoxydihydrochalcone (1)
7-beta-Hydroxy-delta-9-THC (1)
Kaempferol 3-rhamnoside 7-galacturonide (1)
8-Hydroxygalangin 3-methyl ether 8-methylbutyrate (1)

Study type

RNA-seq of coding RNA (1)

Release Date

2010 (1)
2020 (1)

Lab affiliation

Department of Pharmaceutical Sciences, University at Buffalo and NYS Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, USA (1)
Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, New York, United States (1)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (lab head) (1)

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Transcriptomic and metabolomic analyses reveal the differential accumulation of phenylpropanoids and terpenoids in hemp autotetraploid and its diploid progenitor

Background

Cannabis sativa, a dioecious plant that has been cultivated worldwide for thousands of years, is known for its secondary metabolites, especially cannabinoids, which possess several medicinal effects. In this study, we investigated the autopolyploidization effects on the biosynthes...

2023-09-21 | MTBLS6032 | MetaboLights

Integrating transcriptomic and metabolomic analysis of hormone pathways in Acer rubrum during developmental leaf senescence.

Not available

S-EPMC7650285 | biostudies-literature

Interactome analysis of RESC6 and RESC8 from Trypanosoma brucei

Trypanosoma brucei requires extensive uridine insertion and deletion RNA editing of most of their mitochondrial transcripts to generate translatable open reading frames. The RNA editing substrate binding complex (RESC) serves as the scaffold that coordinates the protein-protein and protein-RNA inter...

ORGANISM(S): Trypanosoma brucei

2023-10-12 | PXD046097 | Pride

Single-cell metabolic fingerprints discover a cluster of circulating tumor cells with distinct metastatic potential

Circulating tumor cells (CTCs) are recognized as direct seeds of metastasis. However, CTC count may not be the 'best' indicator of metastatic risk because their heterogeneity is generally neglected. In this study, we develop a molecular typing system to predict colorectal cancer metastasis potent...

2023-08-21 | MTBLS5028 | MetaboLights

High-quality and robust protein quantification in large clinical cohort of serum samples with IonStar

Robust, reliable quantification of large sample cohorts is often essential for meaningful clinical or pharmaceutical proteomics investigations, but it is technically challenging. When analyzing very large numbers of samples, isotope labeling approaches may suffer from substantial batch effects; and...

ORGANISM(S): Homo sapiens (Human)

2023-10-12 | PXD036822 | Pride

Large-cohort clinical study quantitative proteomics ionstar liquid chromatography-mass spectrometry high-resolution mass spectrometry

Targeting the SREBP-dependent lipidomic reprogramming by virus infection for broad-spectrum therapeutic intervention

Viruses are obligate intracellular parasites that exploit the host metabolic machineries to meet their extraordinary biosynthetic demands. Integrative transcriptomic and lipidomic profiling confirmed that Middle East respiratory syndrome coronavirus (MERS-CoV) infection reprograms the host lipid met...

2018-11-26 | MTBLS762 | MetaboLights

LC-MS/MS to identify WT, 8NQ, N91/104/309/322Q and N91/104/309/322 B7H3 interaction

The specific N-glycans of glycoproteins play key roles in regulating protein localization, stability and activity. B7H3, an immune checkpoint molecule, is a highly N-glycosylated membrane protein. However, the key glycosylated asparagine (Asn) residues that mediate the function of the B7H3 protein a...

ORGANISM(S): Homo sapiens (Human)

2025-03-27 | PXD059437 | Pride

Lc-ms/ms B7h3

Single-Base Resolution Methylomes of Silkworms and Functional Importance of Gene Methylation in Insects Revealed by Ultra-High-Throughput Sequencing

Single-base resolution DNA methylomes have been accomplished for both Arabidopsis and human cells which have high genome methylation levels by Illumina ultra-high-throughput bisulfite sequencing technology (MethylC-Seq). Here by combining MethylC-Seq and biological replicate strategies we generated ...

ORGANISM(S): Bombyx mori

2010-04-09 | E-GEOD-18315 | biostudies-arrayexpress

Proteins interacting with GBP5 and RSV-SH protein

HEK293T were transfected with RSV-SH-HA, GBP5-HA or VR1012(empty vector) respectively for 48 h and then harvested. Co-IP assay were performed with HA beads (Roche, catalog no. 11867423001), the elution was analyzed by mass spectrum. Mass spectrum analysis were performed by the national center for pr...

ORGANISM(S): Homo Sapiens

2024-08-06 | PXD054621 |

LC-MS/MS identification of XPO7-interacting proteins

Identification XPO7-interating proteins by ectopically expressed FLAG-tagged XPO7 proteins in HEK293T cells and performed coimmunoprecipitation (co-IP) with FLAG antibody followed by mass spectrometry analysis.