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TranscriptomicsTranscription profiling of S. cerevisiae to zinc limitation in chemostat cultures
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8035 | biostudies-arrayexpress
ProteomicsZinc limitation in Klebsiella pnuemoniae
Nutrient adaptation is key in limiting environments for the promotion of microbial growth and survival. In microbial systems, zinc is an important component for many cellular processes and bioavailability varies greatly among different conditions. In the bacterium, Klebsiella pneumoniae, the impact ...
ORGANISM(S): Klebsiella pneumoniae 
2021-02-12 | PXD016042 | Pride
Virulence Klebsiella Transport Quantiative proteomics Zinc Proteome Secretome 
TranscriptomicsTranscription profiling of S. cerevisiae response to nitrogen limitation in chemostat culture
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8089 | biostudies-arrayexpress
TranscriptomicsZinc-dependent regulation of the adh1 antisense transcript in fission yeast
In yeast, alcohol dehydrogenase I (Adh1) is an abundant zinc binding protein that is required for the conversion of acetaldehyde to ethanol. Through transcriptome profiling of the Schizosaccharomyces pombe genome, we identified a natural antisense transcript at the adh1 locus that is induced in resp...
ORGANISM(S): Schizosaccharomyces pombe 
2012-12-12 | E-GEOD-39701 | biostudies-arrayexpress
TranscriptomicsThe effect of zinc limitation on transcriptome expression in Pseudomonas fluorescens Pf-5
Transcriptomic profiling of Pseudomonas fluorescens Pf-5 comparing zinc-limited culture against zinc-amended culture in M9 minimal media Two-condition experiment, non-zinc treated culture versus zinc sulphate supplemented culture. 3 biological replicates including 3 technical replicates for one of t...
ORGANISM(S): Pseudomonas fluorescens 
2011-10-12 | E-GEOD-32921 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae response to carbon limitation in aerobic chemostat cultures
Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-15 | E-GEOD-8088 | biostudies-arrayexpress
ProteomicsA conserved nucleotide-dependent metal chaperone for managing the cellular zinc economy during zinc limitation
How cells safeguard essential zinc-dependent functions during zinc deficiency is poorly understood. A long-debated strategy is whether soluble metal-trafficking chaperones exist to prioritize specific zinc-dependent proteins. We identified a eukaryotic family of metallochaperones that physically int...
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
MSV000088135 | MassIVE
TranscriptomicsZinc deficiency impacts CO2 assimilation and disrupts copper homeostasis in Chlamydomonas reinhardtii
Zinc is an essential nutrient because of its role in catalysis and in stabilizing protein structure, but excess zinc can also be deleterious. Four nutritional zinc states have been identified in the alga Chlamydomonas reinhardtii: zinc toxic, zinc replete, zinc deficient and zinc limited. Growth is ...
ORGANISM(S): Chlamydomonas reinhardtii 
2013-05-03 | E-GEOD-41096 | biostudies-arrayexpress
TranscriptomicsDifferential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae
The Zap1 transcription factor is a central player in the response of yeast to changes in zinc status. Zap1 acts as both a positive and negative regulator of its target genes. We previously used transcriptome profiling with DNA microarrays to identify 46 potential Zap1 target genes in the yeast gen...
ORGANISM(S): Saccharomyces cerevisiae 
2008-07-04 | E-GEOD-11983 | biostudies-arrayexpress
TranscriptomicsFunctional profiling in yeast with zinc-limitation
Zinc is an essential nutrient because it is a required cofactor for many enzymes and transcription factors. To discover genes and processes in yeast that are required for growth when zinc is limiting, we used genome-wide functional profiling. As a result, we identified over 400 different genes requi...
ORGANISM(S): Saccharomyces cerevisiae 
2012-04-16 | E-GEOD-37254 | biostudies-arrayexpress
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