Zopf D D - OmicsDI

Show results for

Unknown (47)
Transcriptomics (35)
Proteomics (21)
Metabolomics (13)
Genomics (4)
Multiomics (1)

Organisms

Homo sapiens (12)
Mycobacterium tuberculosis (11)
Neisseria gonorrhoeae (4)
Neisseria meningitidis (3)
Mycobacterium tuberculosis H37Rv (2)
Mus musculus (2)
Escherichia coli (2)
Neisseria gonorrhoeae FA19 (1)
Neisseria lactamica 020-06 (1)
Helicobacter pylori P12 (1)
Neisseria cinerea (1)
Neisseria mucosa (1)
Oryctolagus cuniculus (1)
Acinetobacter baumannii (1)
Saccharomyces cerevisiae (1)
Mycolicibacterium smegmatis MC2 155 (1)
Ebola virus (1)
Human immunodeficiency virus 1 (1)
Mycolicibacterium smegmatis (1)
Sudan ebolavirus (1)

Repository

biostudies-arrayexpress (39)
MetaboLights (13)
MassIVE (7)
PAXDB (7)
PanoramaPublic (4)
PeptideAtlas (2)
jPOST (1)

Disease

Uncomplicated gonorrhoea (1)

Technology Type

Mass spectrometry (8)
Mass spectrometry assay (5)

Instrument Platform

Illumina NovaSeq 6000 (7)
Liquid Chromatography MS - negative - hilic (4)
Liquid Chromatography MS - negative - reverse phase (4)
ScanArray Express HT (3)
Illumina NovaSeq X (3)
NextSeq 500 (3)
Jencons Millennium CO2 Incubator (2)
ScanArray Express HT [PerkinElmer] (2)
Compact (2)
Q Exactive (2)
LTQ Orbitrap (2)
LTQ Orbitrap Velos (2)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Desktop (1)
Bacteriological Laboratory (1)
Quantseq FWD kit (Lexogen, Austria) was used to prepare libraries for NGS. Reverse transcription of RNA, amplification of libraries, quality control of libraries and purification were performed exactly as described in manual provided with kit. (1)
RNAeasy kit (1)
Cell culture lab (1)
GeneQuant (1)
Compact ESI-Q-TOF system (Bruker, Germany) (1)
Q Exactive HF-X (1)
Agilent 6520 QTOF (1)
Gas Chromatography MS - - - Liquid Chromatography MS - - - Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)

Publication Date

2026 (12)
2013 (10)
2010 (8)
2025 (4)
2024 (4)
2009 (4)
2020 (4)
2007 (3)
2023 (3)
2012 (2)
2011 (2)
2006 (2)
2018 (2)
2017 (2)
2022 (2)
2021 (2)
2016 (2)
2004 (1)
2019 (1)
2014 (1)

UNIPROT ID/AC

35KD_MYCTU (5)
A85A_MYCTU (5)
A85B_MYCTU (5)
A85C_MYCTU (5)
ACDP_MYCTU (5)
ACNA_MYCTU (5)
ACPM_MYCTU (5)
ACYP_MYCTU (5)
ADHB_MYCTU (5)
ADHC_MYCTU (5)
ADOK_MYCTU (5)
AHPC_MYCTU (5)
AHPE_MYCTU (5)
AK_MYCTU (5)
ALDH_MYCTU (5)
ALF_MYCTU (5)
ALR_MYCTU (5)
AMPA_MYCTU (5)
APA_MYCTU (5)
ARCA_MYCTU (5)
ARC_MYCTU (5)
ARGC_MYCTU (5)
ARLY_MYCTU (5)
AROA_MYCTU (5)
AROB_MYCTU (5)
AROC_MYCTU (5)
AROG_MYCTU (5)
ASPG_MYCTU (5)
ASSY_MYCTU (5)
ATPA_MYCTU (5)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15603 (3)
CHEBI:15741 (3)
CHEBI:15781 (3)
CHEBI:17203 (3)
CHEBI:17895 (3)
CHEBI:18050 (3)
CHEBI:15756 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16196 (2)
CHEBI:16414 (2)
CHEBI:16449 (2)
CHEBI:16467 (2)
CHEBI:16643 (2)
CHEBI:16708 (2)
CHEBI:16768 (2)
CHEBI:16828 (2)
CHEBI:16865 (2)
CHEBI:16977 (2)
CHEBI:17053 (2)
CHEBI:17115 (2)
CHEBI:17196 (2)
CHEBI:17295 (2)
CHEBI:17822 (2)
CHEBI:18019 (2)
CHEBI:18186 (2)
CHEBI:18211 (2)
CHEBI:18237 (2)
CHEBI:22660 (2)

Metabolite Name

Alpha-ketoglutarate (2)
Citrate (2)
Glycine (2)
L-Proline (2)
Succinic acid (2)
Thymine (2)
(+)-Etomidate (1)
(+/-)-Limonene (1)
(+/-)-Metanephrine (1)
(-)-Erythromycin (1)
(-)-Quebrachitol (1)
(1-Methoxy-1H-indol-3-yl)acetonitrile (1)
(1-Methoxy-9H-carbazol-3-yl)methanol (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxybutylidene)amino]hexyl}butanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxydecylidene)amino]hexyl}decanimidic acid (1)
(1Z)-N-{(5S)-6-hydroxy-5-[(E)-(1-hydroxyhexylidene)amino]hexyl}hexanimidic acid (1)
(1Z,3R)-N-[(5S)-6-(acetyloxy)-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(1Z,3R)-N-[(5S)-6-hydroxy-5-{(E)-[(3R)-1-hydroxy-3-isocyanobutylidene]amino}hexyl]-3-isocyanobutanimidic acid (1)
(3E)-4,8-Dimethyl-1,3,7-nonatriene (1)
(3R)-3-[(carboxymethyl)amino]butanoic acid (1)
(3R)-3-[(carboxymethyl)amino]decanoic acid (1)
(3S,8Z,11Z,14Z,17Z)-3-Hydroxyicosatetraenoyl-CoA (1)
(4-Hydroxy-1H-indol-3-yl)acetonitrile (1)
(5alpha,10beta)-6-Allylergoline-8-carboxylic acid (1)
(9Z)-9-Octadecenamide (1)
(9Z)-Octadecenoic acid (1)
(E)-p-coumaric acid (1)
(E,E)-alpha-Farnesene (1)
(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanodecylidene]-L-lysine (1)
(E,Z)-N~2~,N~6~-bis[(3R)-1-hydroxy-3-isocyanododecylidene]-L-lysine (1)

Study type

Transcription profiling by array (19)
RNA-seq of coding RNA (6)
Comparative genomic hybridization by array (3)
DNA-seq (3)
RNA-seq of total RNA (3)
Unknown experiment type (2)
ChIP-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2024 (9)
2010 (8)
2022 (8)
2021 (8)
2026 (7)
2025 (7)
2013 (7)
2023 (5)
2009 (4)
2007 (3)
2020 (3)
2012 (2)
2006 (2)
2019 (2)
2018 (2)
2014 (2)
2011 (1)
2004 (1)
2017 (1)
2016 (1)
2015 (1)
2005 (1)
1998 (1)

Previous page
1 / 12
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 12
Next page

Sort by:

Relevance

Page size

Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts

Most eukaryotic genes express mRNAs with alternative polyadenylation sites at their 3’ ends. Here we show that polyadenylated 3’ termini in three yeast species (S. cerevisiae, K. lactis, D. hansenii) are remarkably heterogeneous. Instead of a few discrete 3’ ends, the average yeast gene has an “en...

ORGANISM(S): Saccharomyces cerevisiae

2013-07-03 | E-GEOD-47661 | biostudies-arrayexpress

Pro-Apoptotic Potential of Pseudevernia furfuracea (L.) Zopf Extract and Isolated Physodic Acid in Acute Lymphoblastic Leukemia Model In Vitro.

Not available

S-EPMC8703293 | biostudies-literature

Potential Effect of Pseudevernia furfuracea (L.) Zopf Extract and Metabolite Physodic Acid on Tumour Microenvironment Modulation in MCF-10A Cells.

Not available

S-EPMC8000760 | biostudies-literature

Rv3400 is a phosphoglucomutase required for trehalose metabolism in Mycobacterium tuberculosis

Mycobacterium tuberculosis is a global killer causing over a million deaths from tuberculosis (TB) every year. It is therefore a major burden on human health. To reduce the deadly impact of TB, we need a better understanding of the strategies used by M. tuberculosis to adapt its...

2026-08-07 | MTBLS13438 | MetaboLights

Mycobacterium tuberculosis efpA CRISPRi knock-down transcriptional profile - induced efpA knock-down strain vs non-induced condition

In Mycobacterium tuberculosis, the efflux pump, EfpA, plays an essential but uncharacterised role in its physiology and antibiotic tolerance. In this study, an ATc-inducible CRISPR interference (CRISPRi) system was introduced into M. tuberculosis to knock-down the expression of efpA and determine an...

ORGANISM(S): Mycobacterium tuberculosis

2024-06-19 | E-MTAB-13755 | biostudies-arrayexpress

Multiple acyl-coA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and during infection

The human pathogen Mycobacterium tuberculosis (Mtb) devotes a significant fraction of its genome to fatty acid metabolism. Although Mtb depends on host fatty acids as a carbon source, fatty acid b-oxidation is mediated by genetically redundant enzymes, which has hampered the development of antitu...

2021-09-29 | MTBLS2374 | MetaboLights

Variants of bcl-2 specific siRNA for silencing antiapoptotic bcl-2 in pancreatic cancer.

Not available

S-EPMC1774673 | biostudies-literature

Pharmacologic activity and pharmacokinetics of metabolites of regorafenib in preclinical models.

Not available

S-EPMC5119973 | biostudies-literature

Whole-Body Electromyostimulation Combined With Individualized Nutritional Support Improves Body Composition in Patients With Hematological Malignancies - A Pilot Study.

Not available

S-EPMC6305403 | biostudies-literature

Sub-millielectronvolt Line Widths in Polarized Low-Temperature Photoluminescence of 2D PbS Nanoplatelets.

Not available