Zymomonas - OmicsDI

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Genomics (333)
Unknown (207)
Transcriptomics (42)
Proteomics (12)
Models (6)
Metabolomics (2)
Methylation profiling (1)
Other (1)

Organisms

Zymomonas mobilis (23)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (20)
Zymomonas mobilis subsp. mobilis ATCC 29191 (2)
Zymomonas mobilis subsp. mobilis (2)
Saccharomyces cerevisiae (1)
Butyrivibrio sp. AE3003 (1)
Staphylococcus epidermidis AG42 (1)
Lachnoclostridium phytofermentans KNHs2132 (1)
Exiguobacterium antarcticum DSM 14480 (1)
Exiguobacterium oxidotolerans JCM 12280 (1)
Exiguobacterium acetylicum DSM 20416 (1)
Exiguobacterium aurantiacum DSM 6208 (1)
Clostridioides mangenotii LM2 (1)
Lachnospiraceae bacterium AC2012 (1)
Flavimarina sp. Hel_I_48 (1)
Prevotella sp. HUN102 (1)
Exiguobacterium chiriqhucha (1)
Pediococcus acidilactici AGR20 (1)
Levilactobacillus brevis AG48 (1)
Polaromonas sp. EUR3 1.2.1 (1)
Limisalsivibrio acetivorans (1)
Clostridium sp. ASBs410 (1)
Cellulomonas sp. KRMCY2 (1)
Gillisia sp. JM1 (1)
Acidovorax sp. JHL-3 (1)
Methylotenera sp. 73s (1)
Prevotella sp. 10(H) (1)
Psychrilyobacter atlanticus DSM 19335 (1)
Methylotenera versatilis 79 (1)
Methylophilus sp. 42 (1)

Organisms

Zymomonas mobilis (162)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (96)
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 (20)
Zymomonas mobilis subsp. mobilis (13)
Zymomonas mobilis subsp. mobilis ATCC 29191 (3)
Zymomonas mobilis subsp. mobilis NCIMB 11163 (2)
Zymomonas mobilis subsp. mobilis ATCC 31822 (2)
Zymomonas mobilis subsp. pomaceae ATCC 29192 (2)
Zymomonas mobilis subsp. mobilis ATCC 10988 (2)
Zymomonas mobilis subsp. mobilis NRRL B-12526 (1)
Zymomonas mobilis subsp. pomaceae (1)

Repository

ENA (328)
geo (34)
biostudies-arrayexpress (13)
pride (9)
BioModels (6)
MassIVE (3)
EVA (2)
MetaboLights (2)

Tissue

Cell culture (3)
Permanent cell line cell (2)
Whole body (1)

Disease

Disease free (2)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (8)
Mass spectrometry (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)

Instrument Platform

- (2)
Orbitrap Ascend (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2014 (9)
2020 (8)
2024 (6)
2013 (6)
2025 (6)
2010 (5)
2023 (5)
2019 (5)
2016 (4)
2012 (4)
2015 (2)
2026 (2)
2022 (2)
2021 (2)
2004 (1)
2018 (1)
2008 (1)

CHEBI ID

CHEBI:17234 (3)
CHEBI:15343 (3)
CHEBI:15422 (3)
CHEBI:16908 (3)
CHEBI:15846 (3)
CHEBI:16761 (3)
CHEBI:16526 (3)
CHEBI:16001 (3)
CHEBI:17794 (3)
CHEBI:17835 (3)
CHEBI:17665 (3)
CHEBI:18021 (3)
CHEBI:16236 (3)
CHEBI:15361 (3)
CHEBI:27781 (2)
CHEBI:64482 (2)
CHEBI:28716 (2)
CHEBI:62237 (1)
CHEBI:17264 (1)
CHEBI:140680 (1)
CHEBI:229583 (1)
CHEBI:178059 (1)
CHEBI:28494 (1)
CHEBI:60287 (1)
CHEBI:50464 (1)
CHEBI:34811 (1)
CHEBI:16038 (1)
CHEBI:17517 (1)
CHEBI:28875 (1)
CHEBI:16196 (1)

Metabolite Name

Cardiolipin (2)
Phosphatidylcholine (2)
Phosphatidylglycerol (2)
Phosphatidylethanolamine (2)
Cis-11,12-methyleneoctadecanoic acid (1)
Vaccenic (1)
Myristoleic acid (1)
Palmitoleic acid (1)
Lactobacillic acid (1)
Myristoleic acid (1)
Palmitoleic acid (1)
Palmitic acid (1)
Myristic acid (1)

First Public Date

2017 (168)
2019 (52)
2024 (23)
2020 (22)
2013 (18)
2014 (12)
2021 (8)
2023 (6)
2026 (5)
2025 (5)
2022 (4)
2016 (2)
2015 (2)
2018 (1)

Modelling Approach

Constraint-based model (4)
Ordinary differential equation model (2)

Lab affiliation

Renmin South Rd. 4-13, Chengdu 610041, China (2)
Department of Biochemistry and Department of Bacteriology University of Wisconsin-Madison, Madison, WI 53706 Dept. of Energy Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53726 (1)
Department of Biomolecular Chemistry and Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA (1)
Department of Biomolecular Chemistry and Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA. Morgridge Institute for Research, Madison, WI (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)
Professor of Biomolecular Chemistry and Chemistry at University of Wisconsin, Madison, USA (1)
Professor of Biomolecular Chemistry and Chemistry at University of Wisconsin-Madison (1)
UW Madison (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (2)

Submitter Keywords

FROG (1)

Study type

Transcription profiling by array (10)
Transcription profiling by tiling array (2)
RNA-seq of non coding RNA (1)

Release Date

2019 (21)
2021 (20)
2024 (19)
2020 (19)
2014 (14)
2025 (14)
2023 (13)
2012 (11)
2022 (9)
2015 (9)
2016 (8)
2010 (8)
2013 (7)
2018 (7)
2017 (6)
2011 (6)
2026 (5)
2009 (5)
2005 (5)
1999 (3)
1998 (3)
2004 (2)
2002 (2)
2008 (1)
2007 (1)
2006 (1)
2001 (1)

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Physiological and Metabolic Responses of Zymomonas mobilis to Lignocellulosic Hydrolysate

This study provides a systems-level evaluation of how Zymomonas mobilis responds to hydrolysate stress, revealing distinct physiological and lipid membrane remodeling responses.

2025-08-01 | MTBLS12808 | MetaboLights

Adaptive Evolution Reveals Mechanisms of Isobutanol Tolerance in Zymomonas mobilis

Isobutanol production has been demonstrated in E. coli and Z. mobilis using heterologous pathways, with titers reaching up to 60% of the theoretical yield under optimized conditions. However, these results often depend on impractical setups, such as continuous product extraction, oxygenation, or ...

2026-03-18 | MTBLS14081 | MetaboLights

Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses

Background Zymomonas mobilis ZM4 is a capable ethanologenic bacterium with high ethanol productivity and ethanol tolerance. Previous studies indicated that several stress-related proteins and changes in the ZM4 membrane lipid composition may contribute to ethanol tolerance. However, the molecular m...

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

2013-09-04 | E-GEOD-21165 | biostudies-arrayexpress

Genome changes associated with a Zymomonas mobilis sodium acetate-tolerant mutant (AcR)

We report the genome changes associated with a Zymomonas mobilis sodium acetate-tolerant mutant (AcR). We used comparative genomics, transcriptomics, and genetics to show nhaA over-expression conferred sodium acetate (NaAc) tolerance in Z. mobilis. We observed a synergistic effect for sodium and ace...

ORGANISM(S): Zymomonas mobilis

2010-05-05 | E-GEOD-18106 | biostudies-arrayexpress

Discovery of ethanol responsive small RNAs in Zymomonas mobilis

This study is aimed for the identification of novel small RNAs under different ethanol producing conditions. We have applied transcriptome analysis to facilitate identification and validation of 15 novel sRNAs in Zymomonas mobilis. We furthermore characterize their expression in the context of high ...

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

2014-05-20 | E-GEOD-57773 | biostudies-arrayexpress

Zymomonas mobilis oxygen stress responses

Zymomonas mobilis ZM4 produces near theoretical yields of ethanol with high specific productivity and recombinant strains are able to ferment both C-5 and C-6 sugars. However, the genetic and physiological basis of the ZM4 response to various industrially-relevant stresses is poorly understood. In t...

ORGANISM(S): Zymomonas mobilis

2010-05-18 | E-GEOD-10302 | biostudies-arrayexpress

Transcriptome Profiling of Zymomonas mobilis Under ethanol stress

Investigation of the expression profiling of the ethanologenic Zymomonas mobilis in response to ethanol stress. A six chip study using total RNA recovered from three separate wild-type cultures of Zymomonas mobilis ATCC31821 and three separate cultures of a triple treated with 5% ethanol. Each chip ...

ORGANISM(S): Zymomonas mobilis

2013-12-31 | E-GEOD-39558 | biostudies-arrayexpress

Transcriptome Profiling of Zymomonas mobilis under furfural stress

Investigation of the expression profiling of the ethanologenic Zymomonas mobilis in response to furfural stress. A six chip study using total RNA recovered from three separate wild-type cultures of Zymomonas mobilis ATCC31821 and three separate cultures of a triple treated with 1.0 g/l furfural. Eac...

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4

2012-05-08 | E-GEOD-37848 | biostudies-arrayexpress

Physiological and Metabolic Responses of Zymomonas mobilis to Lignocellulosic Hydrolysate

This study provides a systems-level evaluation of how Zymomonas mobilis responds to hydrolysate stress, revealing distinct physiological and lipid membrane remodeling responses.

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

2025-08-05 | PXD066951 | Pride

High-resolution “tiling” expression data for Zymomonas mobilis ZM4

High-resolution “tiling” expression data for Zymomonas mobilis ZM4 growing in rich and minimal media, heat-shocked, or at high ethanol One chip for each growth condition and one “genomic control” array hybridized to genomic DNA

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

2013-10-31 | E-GEOD-51870 | biostudies-arrayexpress

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