abp - OmicsDI

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Transcriptomics (930)
Unknown (509)
Proteomics (112)
Genomics (64)
Metabolomics (12)
Multiomics (3)

Organisms

Mus musculus (187)
Homo sapiens (160)
Rattus norvegicus (111)
Arabidopsis thaliana (85)
Saccharomyces cerevisiae (72)
Chlamydomonas reinhardtii (34)
Caenorhabditis elegans (30)
Trypanosoma brucei (16)
Drosophila melanogaster (14)
Schizosaccharomyces pombe (12)
Streptomyces venezuelae (12)
Danio rerio (11)
Folsomia candida (10)
Oryza sativa (9)
Rhizobium leguminosarum (7)
Bacillus amyloliquefaciens (7)
Hordeum vulgare (7)
Oncorhynchus mykiss (7)
Candida albicans (7)
Solanum tuberosum (6)
Escherichia coli K-12 (6)
Pimephales promelas (5)
Oryza sativa Japonica Group (5)
Escherichia coli (5)
Shewanella oneidensis MR-1 (4)
Trypanosoma brucei brucei (4)
Oryza sativa Indica Group (4)
Vibrio cholerae (4)
Glycine max (4)
Triticum aestivum (4)

Organisms

Caenorhabditis elegans (3)
Streptococcus gordonii str. Challis substr. CH1 (1)
Acinetobacter phage sp. (1)
Salmo salar (1)
Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (985)
pride (45)
MassIVE (35)
jPOST (14)
iProX (13)
MetaboLights (12)
ENA (11)
EGA (6)
geo (2)
PeptideAtlas (2)
PanoramaPublic (1)

Tissue

Lung (4)
Bone marrow (3)
Macrophage (3)
Cell culture (3)
Breast (2)
Feces (2)
Cell suspension culture (2)
Primary cell (2)
Liver (2)
Colon (2)
Skin cancer cell (1)
Bone tissue (1)
A-431 cell (1)
A-549 cell (1)
Astrocyte (1)
Melanocyte (1)
Gut (1)
Shoot (1)
Plant cell (1)
Leukocyte (1)
Brain (1)
Root (1)
Testis (1)
Leaf (1)
Erythrocyte (1)
Permanent cell line cell (1)
Epithelial cell (1)
Kidney (1)
T cell (1)
Blood (1)

Disease

Normal (7)
Breast cancer (5)
Diabetes mellitus type 1 (1)
Not applicable (1)
Phyllodes tumor (1)
Colon cancer Dukes C (1)
Post-stasis (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Cutaneous melanoma (1)
Hypertension (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infected with Influenza A/WSN/33 (H1N1) (1)
Photoreceptor degeneration (1)
Infiltrating ductal carcinoma (1)
Chronic granulomatous disease (1)
Primary tumor (1)
IRAK-4 Q293X mutation (1)
Infected (1)
Invasive lobular carcinoma (1)
Non-infected (1)
IBDV infected (1)
Bordetella pertussis inoculated (1)
Head and neck squamous cell carcinoma (1)
Diabetes mellitus (1)
Chronic lymphocytic leukemia (1)
Chronic myelogenous leukemia (1)
Sarcoma (1)
Reference (1)
S enteritidis (1)
Prostate carcinoma (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (14)
Mass spectrometry assay (6)
Bottom-up proteomics (6)
Mass spectrometry (5)
Data-dependent acquisition (5)
Gel-based experiment (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Top-down proteomics (2)
NMR spectroscopy (1)
Affinity proteomics (1)
HDMSE (1)

Instrument Platform

Illumina HiSeq 2000 (44)
NextSeq 500 (24)
Illumina NovaSeq 6000 (23)
Illumina HiSeq 2500 (15)
Illumina HiSeq 4000 (12)
NextSeq 550 (6)
Illumina Genome Analyzer IIx (4)
Illumina Genome Analyzer II (4)
AB SOLiD 4 System (3)
Nanostring GeoMx spatial profiler (2)
FS450 (2)
GCS3000 (2)
Other (2)
ArrayWoRx Biochip Reader [Applied Precision] (2)
G2565AA DNA microarray scanner [Agilent] (2)
GenePix 4000B [Axon Instruments] (2)
Scanning hardware (2)
NextSeq 2000 (2)
BGISEQ-500 (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 2000 platform (1)
10X chemistry 3' v3 (1)
Maxwell® AS2000 instrument (1)
See manuscript (1)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (1)
Aspara® Smart Grower Hydroponic (1)
10X genomics Chromium X (1)

Publication Date

2014 (117)
2013 (116)
2011 (99)
2010 (93)
2015 (91)
2012 (81)
2009 (64)
2008 (59)
2016 (57)
2023 (35)
2017 (35)
2018 (32)
2022 (29)
2026 (27)
2024 (26)
2007 (26)
2025 (21)
2021 (19)
2019 (19)
2006 (19)
2020 (13)
2005 (10)
2004 (7)

UNIPROT ID/AC

Q9CS84-2 (2)
Q8BIZ1 (2)
Q61423 (2)
F8WIG2 (2)
D3YZU5 (2)
B9EIV0 (2)
Q9WV31 (2)
Q9QZN1 (2)
Q9JJV2 (2)
Q7TNS5 (2)
Q3UHD8 (2)
Q0VF59 (2)
P63141 (2)
P60202 (2)
P35438 (2)
P35436 (2)
P23819-4 (2)
P16388 (2)
G3X9V4 (2)
F6SEU4 (2)
B9EIV1 (2)
B1AS06 (2)
A2CG20 (2)
Q811D0-2 (2)
Q62108 (2)
P70175 (2)
B1AZP2-2 (2)
V9GXA7 (2)
Q9Z2T6 (2)
Q9R0H5 (2)

ENSEMBL ID

ENSMUSP00000141097 (2)

CHEBI ID

CHEBI:16135 (2)
CHEBI:15366 (2)
CHEBI:143591 (1)
CHEBI:143589 (1)
CHEBI:143588 (1)
CHEBI:143587 (1)
CHEBI:143584 (1)
CHEBI:144355 (1)
CHEBI:143583 (1)
CHEBI:143582 (1)
CHEBI:143580 (1)
CHEBI:144350 (1)
CHEBI:142657 (1)
CHEBI:143579 (1)
CHEBI:143578 (1)
CHEBI:87527 (1)
CHEBI:143581 (1)
CHEBI:143586 (1)
CHEBI:144354 (1)
CHEBI:144356 (1)
CHEBI:136920 (1)
CHEBI:66682 (1)
CHEBI:68889 (1)
CHEBI:133634 (1)
CHEBI:87494 (1)
CHEBI:89199 (1)
CHEBI:77322 (1)
CHEBI:7747 (1)
CHEBI:143585 (1)
CHEBI:143592 (1)

Metabolite Name

Thymine (5)
Serotonin (5)
Indole (5)
Oleamide (5)
Spermidine (5)
Glycerophosphocholine (5)
Sarcosine (5)
Adenosine (5)
Creatine (5)
Choline (5)
Agmatine (4)
Butyric acid (4)
3-Hydroxybenzaldehyde (4)
Heptadecanoic acid (4)
Valine (4)
Histidine (4)
Allantoic acid (4)
3-methoxytyramine (4)
5'-Methylthioadenosine (4)
5-Hydroxy-L-tryptophan (4)
Phytosphingosine (4)
Ergothioneine (4)
Homoarginine (4)
Pantothenic acid (4)
L-Kynurenine (4)
Methionine (4)
Deoxycholic acid (4)
Glycocholic acid (4)
Arginine (4)
Valeric acid (4)

First Public Date

2023 (2)
2022 (2)
2020 (2)
2014 (2)
2026 (1)
2025 (1)
2018 (1)

Classification

viruses (1)
bacteria (1)

Study type

Transcription profiling by array (542)
RNA-seq of coding RNA (171)
ChIP-seq (43)
RNA-seq of non coding RNA (43)
ChIP-chip by tiling array (32)
Other (20)
Comparative genomic hybridization by array (17)
ChIP-chip by array (16)
RNA-seq of coding RNA from single cells (15)
Methylation profiling by array (13)
RIP-seq (10)
Unknown experiment type (8)
RNA-seq of total RNA (5)
High-throughput sequencing (4)
Transcription profiling by tiling array (4)
Spatial transcriptomics by high-throughput sequencing (3)
Human - High-throughput sequencing (2)
Plant - High-throughput sequencing (2)
Genotyping by array (2)
CLIP-seq (2)
Transcription profiling by RT-PCR (2)
ATAC-seq (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Proteomic profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by array, ChIP-chip by array (1)
GRO-seq (1)
Transcription profiling by SAGE (1)
Plant - Two-color microarray (1)

Release Date

2014 (127)
2013 (126)
2011 (109)
2015 (100)
2012 (97)
2010 (97)
2016 (78)
2022 (77)
2024 (68)
2009 (67)
2023 (65)
2021 (64)
2008 (64)
2017 (60)
2020 (55)
2025 (52)
2018 (51)
2019 (40)
2007 (30)
2006 (22)
2026 (19)
2005 (11)
2004 (10)
1998 (2)
2001 (1)
1997 (1)
1979 (1)

Lab affiliation

Pacific Northwest National Laboratory, USA (3)
Pacific Northwest National Laboratory (3)
The Bone Biology and Disease Laboratory, School of Biomedical Sciences, The University of Western Australia (2)
Department of Chemistry Center for Gastrointestinal Biology and Disease Integrated Program for Biological and Genome Sciences University of North Carolina at Chapel Hill (2)
INSERM IRSD U1220 CHU PURPAN PLACE DU DOCTEUR BAYLAC CS 60039 31024 TOULOUSE CEDEX 3 FRANCE (1)
Biomolecular Mass Spectrometry and Proteomics, University Utrecht, Utrecht, The Netherlands (1)
Team Microenvironment, Signalling and Cancer Inserm UMR1065/C3M, 151 Route de Ginestière BP2 3194, F-06204 Nice cedex 3. (1)
Biological and Environmental Science and Engineering Division, Center for Desert Agriculture, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia (1)
Internal Medicine (1)
Department of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, Netherlands. (1)
Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (1)
Aix-Marseille Univ, CNRS, LISM, IMM FR3479, 13009 Marseille, France (1)
Department of Medical Biology, UiT- The Arctic University of Norway, 9019 Tromsø, Norway (1)
Instituto de Ecología, A.C. (1)
Department of Medical Biology, Health Faculty, UiT - The Arctic University of Norway, Norway. (1)
MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, UK (1)
Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, London W12 0BZ, U.K. (1)
The Bone Biology and Disease Laboratory, The University of Western Australia (1)
Department of Comparative Biochemistry and Bioanalytics, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University in Krakow (1)
Department of Cell and Chemical Biology Leiden University Medical Centre Leiden, The Netherlands. (1)
Bio-Organic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands (1)
The Francis Crick Institute, London, NW1 1AT, United Kingdom (1)
Department of Dermatology, Northwestern University, USA (1)
Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria (1)
Professor of Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Pharma Ltd Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (1)
Boston College (1)
Assoc. Prof. Dr. Christian S. Lentz Associate Professor, Department of Medical Biology, UiT- The Arctic University of Norway, 9019 Tromsø, Norway (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, The Netherlands Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, The Netherlands (1)
MRC Protein phosphorylation and ubiquitylation unit, University of Dundee (1)
Thoracic Oncology, Moffitt Cancer Center, Tampa, FL, USA (1)

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B12-ABP labeling of Bacteroides thetaiotaomicron

Proteomic data from B. theta probed with B12-ABP; treated with B12-ABP or CNB12

ORGANISM(S): Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)

2022-01-11 | PXD015052 | Pride

B12-abp Click chemistry

Acinetobacter phage sp. strain:Abp-24 | isolate:sweage water

Acinetobacter phage sp. strain:Abp-24 | isolate:sweage water Genome sequencing

PRJNA1327232 | ENA

The role of retrotransposons in gene family expansions: insights from the mouse Abp gene family.

Not available

S-EPMC3669608 | biostudies-literature

Totality of Evidence Supporting the Use of ABP 980, a Trastuzumab Biosimilar: Practical Considerations.

Not available

S-EPMC8297514 | biostudies-literature

Real-World Experience of Adalimumab Biosimilar (ABP 501) Use in Patients with Inflammatory Bowel Disease in Europe.

Not available

S-EPMC10796661 | biostudies-literature

Treatment persistence and switching patterns of ABP 501 in European patients with inflammatory bowel disease.

Not available

S-EPMC10787526 | biostudies-literature

Functional and Nonclinical Similarity of ABP 980, a Biosimilar of Trastuzumab.

Not available

S-EPMC6834741 | biostudies-literature

Cytoskeletal protein ABP-280 directs the intracellular trafficking of furin and modulates proprotein processing in the endocytic pathway.

Not available

S-EPMC1424222 | biostudies-literature

Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals.

Not available

S-EPMC2291036 | biostudies-literature

Risk of T1D progression in islet autoantibody positive children can be further stratified using expression patterns of multiple genes implicated in peripheral blood lymphocyte activation and function

To identify genes with expression levels that are associated with T1D progression from AbP (islet autoantibody positive), global gene expression changes were analyzed in AbP subjects with different T1D progression rate. Total RNA were obtained from peripheral blood mononuclear cells (PBMC) of tota...

ORGANISM(S): Homo sapiens

2014-04-10 | E-GEOD-51058 | biostudies-arrayexpress

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1635 Results

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