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UnknownVelvet: algorithms for de novo short read assembly using de Bruijn graphs.
Not available
S-EPMC2336801 | biostudies-literature
UnknownReference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph.
Not available
S-EPMC4570262 | biostudies-literature
UnknownFast and efficient Rmap assembly using the Bi-labelled de Bruijn graph.
Not available
S-EPMC8147420 | biostudies-literature
UnknownIdentifying splicing regulatory elements with de Bruijn graphs.
Not available
S-EPMC4253301 | biostudies-literature
UnknownAccurate self-correction of errors in long reads using de Bruijn graphs.
Not available
S-EPMC5351550 | biostudies-literature
UnknownCStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure.
Not available
S-EPMC8651127 | biostudies-literature
Unknownploidyfrost: Reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graphs.
Not available
S-EPMC10092044 | biostudies-literature
TranscriptomicsVariation in homeodomain DNA-binding revealed by high-resolution analysis of sequence preferences
Most homeodomains are unique within a genome, yet many are highly conserved across vast evolutionary distances, implying strong selection on their precise DNA-binding specificities. We determined the binding preferences of the majority (168) of mouse homeodomains to all possible 8-base sequences, re...
ORGANISM(S): Mus musculus 
2010-06-26 | E-GEOD-11239 | biostudies-arrayexpress
TranscriptomicsA library of yeast transcription factor motifs
The sequence specificity of DNA-binding proteins is the primary mechanism by which the cell recognizes genomic features. Here, we describe systematic determination of yeast transcription factor DNA-binding specificities. We obtained binding specificities for 112 DNA-binding proteins representing 19 ...
ORGANISM(S): Saccharomyces cerevisiae 
2008-12-26 | E-GEOD-12349 | biostudies-arrayexpress
TranscriptomicsMolecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity
A subfamily of Drosophila homeodomain (HD) transcription factors (TFs) controls the identities of individual muscle founder cells (FCs). However, the molecular mechanisms by which these TFs generate unique FC genetic programs remain unknown. To investigate this problem, we first applied genome-wide ...
ORGANISM(S): Drosophila melanogaster 
2012-01-28 | E-GEOD-35380 | biostudies-arrayexpress
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