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TranscriptomicsChromatin position effects assayed by thousands of reporters integrated in parallel (cell lines with mPGK IRs)
Reporter genes integrated into the genome are a powerful tool to reveal effects of regulatory elements and local chromatin context on gene expression. However, so far such reporter assays have been of low throughput. Here we describe a multiplexing approach for the parallel monitoring of transcripti...
ORGANISM(S): Mus musculus 
2013-08-16 | E-GEOD-49807 | biostudies-arrayexpress
TranscriptomicsChromatin position effects assayed by thousands of reporters integrated in parallel (tet-Off TRIP pools)
Reporter genes integrated into the genome are a powerful tool to reveal effects of regulatory elements and local chromatin context on gene expression. However, so far such reporter assays have been of low throughput. Here we describe a multiplexing approach for the parallel monitoring of transcripti...
ORGANISM(S): Mus musculus 
2013-08-16 | E-GEOD-49806 | biostudies-arrayexpress
TranscriptomicsChromatin position effects assayed by thousands of reporters integrated in parallel (mPGK TRIP pools)
Reporter genes integrated into the genome are a powerful tool to reveal effects of regulatory elements and local chromatin context on gene expression. However, so far such reporter assays have been of low throughput. Here we describe a multiplexing approach for the parallel monitoring of transcripti...
ORGANISM(S): Mus musculus 
2013-08-16 | E-GEOD-48608 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of S. cerevisiae to investigate formaldehyde as source of free-energy during growth on glucose
Previously, it has been demonstrated that formate can be utilized by Saccharomyces cerevisiae as additional energy source using cells grown in a glucose-limited chemostat. Here, we investigated utilization of formaldehyde as co-substrate. Since endogenous formaldehyde dehydrogenase activities were i...
ORGANISM(S): Saccharomyces cerevisiae 
2008-10-18 | E-GEOD-8902 | biostudies-arrayexpress
TranscriptomicsChromatin position effects assayed by thousands of reporters integrated in parallel (RNA-Seq)
Reporter genes integrated into the genome are a powerful tool to reveal effects of regulatory elements and local chromatin context on gene expression. However, so far such reporter assays have been of low throughput. Here we describe a multiplexing approach for the parallel monitoring of transcripti...
ORGANISM(S): Mus musculus 
2013-08-16 | E-GEOD-48607 | biostudies-arrayexpress
ProteomicsDrug-induced epigenomic plasticity reprograms circadian rhythm regulation to drive prostate cancer towards androgen-independence
In prostate cancer, androgen receptor (AR)-targeting agents are very effective in various stages of the disease. However, therapy resistance inevitably occurs and little is known about how tumor cells adapt to bypass AR suppression. Here, we performed integrative multi-omics analyses on tissues isol...
ORGANISM(S): Homo sapiens (Human) 
2022-10-14 | PXD032041 | Pride
Foxa1 Prostate cancer Androgen receptor(ar) Enzalutamide Lc-msms Arntl 
GenomicsCopy number profiling of primary samples and cell lines of retinoblastoma
Illumina SNP-arrays for matching retinoblastoma-blood pairs and retinoblastoma cell lines.
EGAD00010000908 | EGA
GenomicsCopy number profiling of primary samples and cell lines of retinoblastoma
While RB1 loss initiates retinoblastoma development, additional somatic copy number alterations (SCNAs) can drive tumor progression. Although SCNAs have been identified with good concordance between studies at a cytoband resolution, accurate identification of single genes for all recurrent SCNAs is ...
EGAS00001001715 | EGA
GenomicsThe Dutch retinoblastoma research team from the VU University medical center
Data Access Committee EGAC00001000431
EGAC00001000431 | EGA
TranscriptomicsGene expression profiles of retinoblastoma cell lines
In order to identify the gene targets of frequently altered chromosomal regions in retinoblastoma, a meta-analysis of genome-wide copy number alterations studies on primary retinoblastoma tissue and retinoblastoma cell lines was performed. Published studies were complemented by copy number and gene ...
ORGANISM(S): Homo sapiens 
2016-03-31 | E-GEOD-77094 | biostudies-arrayexpress
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