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ProteomicsChikungunya virus phosphoproteomics
SILAC-labeled MRC-5 cells were seeded in 75-cm2 flasks 1 day before infection with CHIKV-LS3 [1] at MOI 5. One hour post infection (h p.i.), the inoculum was removed and replaced with SILAC DMEM containing 2% dialyzed FBS, 0.280 mM arginine, 0.384 mM lysine, 0.5 mM proline, 25 mM HEPES, 2 mM L-Gluta...
ORGANISM(S): Homo sapiens (Human) 
2022-02-28 | PXD009381 | Pride
Chikungunya virus chikv phosphoproteomics 
ProteomicsElucidation of the glycan structure of the b-type flagellin of Pseudomonas aeruginosa PAO1
Flagella are essential for motility and pathogenicity in many bacteria. The main component of the flagellar filament, flagellin, often undergoes post-translational modifications, with glycosylation being a common occurrence. In Pseudomonas aeruginosa PAO1, the b-type flagellin is O-glycosylated with...
ORGANISM(S): Pseudomonas aeruginosa PAO1 
2025-05-07 | PXD056085 | Pride
Glycosylation Mass spectrometry (ms) Proteomics Cell motility Bacteria Pseudomonas 
ProteomicsA differential proteomics pipeline for unsequenced species
Shotgun proteomics experiments often take the form of a differential analysis, where two or more samples are compared against each other. The objective is to identify proteins that are either unique to a specific sample or a set of samples (qualitative differential proteomics), or that are significa...
ORGANISM(S): Taenia solium (Pork tapeworm) Escherichia coli Taenia hydatigena (Tapeworm) 
2016-04-29 | PXD003625 | Pride
Escherichia coli Taenia solium Taenia hydatigena 
UnknownQuantifying dysmorphologies of the neurocranium using artificial neural networks.
Not available
S-EPMC11547242 | biostudies-literature
UnknownA diffusion tensor imaging analysis of white matter microstructures in non-operated craniosynostosis patients.
Not available
S-EPMC9643264 | biostudies-literature
ProteomicsThe mRNA-binding proteome of proliferating and differentiated muscle cells
Muscle formation is a coordinated process driven by extensive gene expression changes where single cells fuse together to form multinucleated muscle fibers. Newly synthesized mRNAs are then regulated by RNA binding proteins(RBPs)affecting post-transcriptional transcripts metabolism. We determined ho...
ORGANISM(S): Homo sapiens (Human) 
2020-06-09 | PXD015471 | Pride
Rna binding proteins  interactome  duchenne muscular dystrophy 
UnknownCytomegalovirus in autoimmunity: T cell crossreactivity to viral antigen and autoantigen glutamic acid decarboxylase.
Not available
S-EPMC31166 | biostudies-literature
MetabolomicsAMPK activation induces RALDH+ tolerogenic dendritic cells by rewiring glucose and lipid metabolism.
Dendritic cell (DC) activation and function are underpinned by profound changes in cellular metabolism. Several studies indicate that the ability of DCs to promote tolerance is dependent on catabolic metabolism. Yet the contribution of AMP-activated kinase (AMPK), a central energy sensor promoting c...
2024-08-16 | MTBLS10647 | MetaboLights
UnknownIdentification and characterization of a novel outer membrane protein (OMP J) of Moraxella catarrhalis that exists in two major forms.
Not available
S-EPMC1291255 | biostudies-literature
ProteomicsPromiscuity of peptides presented in HLA-DP molecules from different immunogenicity groups is associated with T-cell cross-reactivity
In the context of HLA-DP-mismatched allogeneic stem cell transplantation, mismatched HLA-DP alleles can provoke profound allo-HLA-DP-specific immune responses from the donor T-cell repertoire leading to graft-versus-leukemia effect and/or graft-versus-host disease in the patient. The magnitude of al...
ORGANISM(S): Homo sapiens (Human) 
2022-02-12 | PXD030591 | Pride
Allosct Dpc-classification Cd4 t-cell clones Peptidome Hla-dp Cross-reactivity 
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