Browse
Submit Data
Databases
API
Help

Dataset Information

9 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-31677

ABSTRACT: Transcription profiling by array of Cabernet Sauvignon grapes after growth in increased salinity or water deprivation

OTHER RELATED OMICS DATASETS IN: PRJNA145375

PROVIDER: E-GEOD-31677 | ExpressionAtlas | 2014-07-31

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Similar Datasets

Cramer- Short-term Shoot Tip - Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling compared to osmotic and salinity stress

Project description:Shoot tips of Cabernet Sauvignon were exposed to chilling, salinity or dehydration (PEG) for short durations.

2010-08-09 | PRD000218 | Pride

Gene expression during graft union formation in auto- and hetero-grafts of grapevine

Project description:Transcriptional changes occurring at the graft interface of auto- (Cabernet Sauvignon/ Cabernet Sauvignon) and hetero-grafted (Cabernet Sauvignon/ Riparia Gloire de Montpellier and Cabernet Sauvignon /1103 Paulsen) grapevine. Gene expression profiling was done using the Nimblegen whole genome array with 3 biological replicates of 15 pooled graft interfaces harvested 3, 7, 14 and 28 d after grafting.

2014-04-09 | E-MTAB-1610 | biostudies-arrayexpress

Long-term Salt & Water Stress in Grapes

Project description:Potted Cabernet Sauvignon vines in the greenhouse were exposed to irrigated controls, non-irrigated water-deficits, and saline treatments for 16 days. Plant shoot tips were harvested every 4 days (0,4,8,12, and 16 days) to measure the progression of changes of global gene expression due to the stress. PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Grant Cramer. The equivalent experiment is VV2 at PLEXdb. time: Day 0 - stress: Control(3-replications); time: Day 4 - stress: Control(3-replications); time: Day 4 - stress: Water-Deficit(3-replications); time: Day 4 - stress: Salinity(3-replications); time: Day 8 - stress: Control(3-replications); time: Day 8 - stress: Water-Deficit(3-replications); time: Day 8 - stress: Salinity(3-replications); time: Day 12 - stress: Control(3-replications); time: Day 12 - stress: Water-Deficit(3-replications); time: Day 12 - stress: Salinity(3-replications); time: Day 16 - stress: Control(3-replications); time: Day 16 - stress: Water-Deficit(3-replications); time: Day 16 - stress: Salinity(3-replications)

2011-08-25 | E-GEOD-31677 | biostudies-arrayexpress

Comparative Analyses of Five Grapevine (Vitis vinifera L.) Cultivars Under Seasonal Water Deficit

Project description:Berry skin total protein from Cabernet Sauvignon, Merlot, Pinot Noir, Chardonnay and Semillon. Treatments were control (well-watered) versus restricted irrigation (water-deficit). Samples were taken from harvest-ripe whole berry clusters following a seasonal water deficit in treatment vines. A comparative analysis between the cultivars and treatments was performed. Associated dataset identifiers: GSE72421, PRJNA268857.

2017-12-11 | PXD001661 | Pride

2011_culture in vitro_sugar anthocyanin

Project description:Transcriptional changes occurring in grape berries (Vitis vinefera L. cv Cabernet Sauvignon) cultured in vitro with high (468 mM) and low (58 mM) concentrations of glucose in the culture medium was verified. Gene expression profiling was done using the Nimblegen whole genome array with 3 biological replicates.

2014-07-16 | E-MTAB-1634 | biostudies-arrayexpress

Gene expression differences between dwarf and normal individuals of F2 population CSxRGM_F2 of grapevine

Project description:Gene expression differences between grapevines with a dwarf and normal phenotype of an F2 population of a cross between Vitis vinifera cv. Cabernet Sauvignon x V. riparia cv Riparia Gloire de Montpellier called CSxRGM_F2. Gene expression profiling was done using the Nimblegen whole genome array with 5 biological replicates.

2020-01-29 | E-MTAB-2472 | biostudies-arrayexpress

V. vinifera 'Cabernet sauvignon' and V. aestivalis 'Norton' innoculated with Erysiphe necator conidiospores

Project description:we analyzed pathogen-induced changes in the transcriptome of Vitis vinifera ‘Cabernet sauvignon’ and Vitis aestivalis ‘Norton’ by conducting a large-scale study to measure transcript abundance at 0, 4, 8, 12, 24, and 48 hours post-treatment in conidiospore- and mock-inoculated leaves using Affymetrix GeneChip Vitis vinifera Genome Array Keywords: time course

2007-11-29 | GSE6404 | GEO

Response of grapevine shoot apex expression to grafting with rootstocks

Project description:The transcriptional response in the shoot apex to hetero-grafting Cabernet Sauvignon (CS) with the rootstocks 1103 Paulsen (CS/1103P) and Riparia Gloire de Montpellier (CS/RG) compared to the auto-grafted control (CS/CS) four months after grafting. Gene expression profiling was done using the Nimblegen whole genome array with 4 biological replicates of 5 pooled shoot apices.

2014-01-11 | E-MTAB-1523 | biostudies-arrayexpress

Long-term Salt & Water Stress in Grapes

2011-08-26 | GSE31677 | GEO

Gene expression during wood pathogen infection in the presence of a root biocontrol agent in grapevine.

Project description:Transcriptional changes occurring at the infection site of 2 weeks old Cabernet sauvignon grapevine cuttings infected with a wood pathogen (Phaeomoniella chlamydospora) in the presence of a root-inoculated biocontrol agent (Pythium oligandrum). Gene expression profiling was done using the Nimblegen whole genome array with 3 biological replicates of 3 pooled wood chunks harvested 0 and 14 d after treatment (pathogen infection, biocontrol agent inoculation, mock treatment).

2016-03-15 | E-MTAB-3899 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data