Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells


ABSTRACT: In mouse embryonic stem cells SNPs disrupting closely-spaced hexanucleotide motifs are associated with lack of ZFP57 binding and H3K9me3 enrichment. Examination of ZFP57-KAP1 allele-specific binding in two lines of mouse embryonic stem cells JB1 and BJ1 generated from F1 hybrids derived from JF1 x B6 and B6 x JF1 crosses respectively.

ORGANISM(S): Mus musculus

SUBMITTER: Marco Cammisa 

PROVIDER: E-GEOD-74757 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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ZFP57 recognizes multiple and closely spaced sequence motif variants to maintain repressive epigenetic marks in mouse embryonic stem cells.

Anvar Zahra Z   Cammisa Marco M   Riso Vincenzo V   Baglivo Ilaria I   Kukreja Harpreet H   Sparago Angela A   Girardot Michael M   Lad Shraddha S   De Feis Italia I   Cerrato Flavia F   Angelini Claudia C   Feil Robert R   Pedone Paolo V PV   Grimaldi Giovanna G   Riccio Andrea A  

Nucleic acids research 20151019 3


Imprinting Control Regions (ICRs) need to maintain their parental allele-specific DNA methylation during early embryogenesis despite genome-wide demethylation and subsequent de novo methylation. ZFP57 and KAP1 are both required for maintaining the repressive DNA methylation and H3-lysine-9-trimethylation (H3K9me3) at ICRs. In vitro, ZFP57 binds a specific hexanucleotide motif that is enriched at its genomic binding sites. We now demonstrate in mouse embryonic stem cells (ESCs) that SNPs disrupti  ...[more]

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