Gallbladder cancer integrated bioinformatics analysis of protein profile data.
Ontology highlight
ABSTRACT: Aim
Identifying the critical genes that differentiate gall bladder cancer from a normal gall bladder and the related biological terms was the aim of this study.Background
The molecular mechanism underlying gall bladder cancer (GBC) trigger and development still requires investigations. Potential therapeutic biomarkers can be identified through protein-protein interaction network prediction of proteome as a complementary study.Methods
Here, a literature review of proteomics studies of gall bladder cancer from 2010 to 2019 was undertaken to screen differentially expressed proteins in this cancer. A network of 27 differentially expressed proteins (DEPs) via Cytoscape 3.7.1 and its plug-ins was constructed and analyzed.Results
Ten proteins were introduced as hub-bottlenecks among which four were from DEPs. The gene ontology analysis also indicated that positive regulation of multi-organism process and regulation of response to biotic stimulus are the most disrupted biological processes of GBC considering their relationships with the DEPs.Conclusion
ACTG, ALB, GGH, and DYNC1H1, and relative biological terms were introduced as drug targets and possible diagnostic biomarkers.
SUBMITTER: Zali MR
PROVIDER: S-EPMC7011054 | biostudies-literature | 2019
REPOSITORIES: biostudies-literature
Publications
Gallbladder cancer integrated bioinformatics analysis of protein profile data.
Zali Mohammad Reza MR Zamanian Azodi Mona M Razzaghi Zahra Z Heydari Mohammad Hossain MH
Gastroenterology and hepatology from bed to bench 20190101 Suppl1
<h4>Aim</h4>Identifying the critical genes that differentiate gall bladder cancer from a normal gall bladder and the related biological terms was the aim of this study.<h4>Background</h4>The molecular mechanism underlying gall bladder cancer (GBC) trigger and development still requires investigations. Potential therapeutic biomarkers can be identified through protein-protein interaction network prediction of proteome as a complementary study.<h4>Methods</h4>Here, a literature review of proteomic ...[more]
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