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ProteomicsCross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topology
The specific functions of cellular organelles and sub-compartments depend on their protein content, which can be characterized by spatial proteomics approaches. However, many spatial proteomics methods are limited in their ability to resolve organellar sub-compartments, profile multiple sub-compartm...
ORGANISM(S): Homo sapiens (Human) 
2024-02-21 | PXD046382 | Pride
Synaptic vesicles Xl-ms Mitochondria Spatial proteomics Dsbso 
UnknownCross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topologies.
Not available
S-EPMC11024108 | biostudies-literature
ProteomicsCross-link assisted spatial proteomics to map sub-organelle proteomes and membrane protein topology
The specific functions of cellular organelles and sub-compartments depend on their protein content, which can be characterized by spatial proteomics approaches. However, many spatial proteomics methods are limited in their ability to resolve organellar sub-compartments, profile multiple sub-compartm...
ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse) 
2024-02-21 | PXD032132 | Pride
Synaptic vesicles Xl-ms Mitochondria Spatial proteomics 
ProteomicsMULocDeep: An Interpretable Deep Learning Model for Protein Localization Prediction with Sub-organelle Resolution
Prediction of protein localization plays an important role in understanding protein function and mechanism. A deep learning-based localization prediction tool (“MULocDeep”) assessing each amino acid’s contribution to the localization process provides insights into the mechanism of protein sorting an...
ORGANISM(S): Solanum tuberosum (Potato) Arabidopsis thaliana (Mouse-ear cress) Vicia faba var. faba 
2022-02-15 | PXD019987 | Pride
Protein localization prediction Shotgun proteomics Protein targeting Plant mitochondria isolation Deep learning 
UnknownA predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacterium Kuenenia stuttgartiensis.
Not available
S-EPMC2881027 | biostudies-literature
UnknownDissecting the subcellular compartmentation of proteins and metabolites in arabidopsis leaves using non-aqueous fractionation.
Not available
S-EPMC4159647 | biostudies-literature
UnknownProtein composition of Trypanosoma brucei mitochondrial membranes.
Not available
S-EPMC2842120 | biostudies-literature
UnknownMapping the proteome landscape of Indian Zebu (Sahiwal) spermatozoa using high-resolution mass spectrometry and <i>in-silico</i> annotation.
Not available
S-EPMC12674427 | biostudies-literature
UnknownA draft map of the mouse pluripotent stem cell spatial proteome.
Not available
S-EPMC4729960 | biostudies-literature
ProteomicsDefinition of a high-confidence mitochondrial proteome at quantitative scale_submitochondrial profiling
Mitochondria perform central functions in cellular bioenergetics, metabolism and signaling and their malfunction has been linked to numerous diseases. The available studies cover only part of the mitochondrial proteome and a separation of core mitochondrial proteins from associated fractions has not...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2017-12-06 | PXD007618 | Pride
Saccharomyces cerevisiae Silac (sub)organellar proteomics 
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