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Unknown (18781)
Transcriptomics (15029)
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Organisms

Homo sapiens (6968)
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Caenorhabditis elegans (139)
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Organisms

Mus musculus (2127)
Homo sapiens (1554)
Rattus norvegicus (72)
Drosophila melanogaster (49)
Danio rerio (39)
Sus scrofa (37)
Bos taurus (36)
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Macaca fascicularis (12)
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Capra hircus (11)
Xenopus laevis (9)
mouse gut metagenome (8)
Canis lupus familiaris (7)
Mustela putorius furo (6)
Caenorhabditis elegans (6)
feces metagenome (6)
bovine gut metagenome (5)
sheep gut metagenome (4)
Xenopus tropicalis (4)
Shigella flexneri (4)
Mus (4)
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Cavia porcellus (3)
Anopheles gambiae (3)
human nasopharyngeal metagenome (3)
Aspergillus fumigatus (3)
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Repository

biostudies-arrayexpress (12735)
ENA (5039)
geo (3963)
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pride (491)
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LINCS (11)
BioModels (10)
EVA (10)
dbGaP (9)
NODE (4)
GNPS (3)
Cell Collective (1)
MetabolomicsWorkbench (1)

Tissue

Retina (8)
Gallbladder tissue, gallbladder cancer, gallbladder cell lines (2)
Oral hard palate epithelium (1)
Tail skin epithelium (1)
Intestine smooth muscle (1)
Epithelium of crypt of Lieberkuhn (1)
Retina with retinal pigment epithelium (1)
Jejunal epithelium (1)
Proximal colon (1)
Distal colon (1)
Lens of camera-type eye (1)
Lateral nasal prominence (1)
Central neural epithelium (1)
Medial nasal prominence (1)
Caudal brain neural epithelium (1)
Lateral prominence neural epithelium (1)
Floor plate (1)
Epidermal ectoderm (1)
Non-floor plate neural epithelium (1)
Mesoderm (1)
Olfactory pit (1)
Maxillary arch (1)
Mandibular arch (1)
Dorsal control neural epithelium (1)
Head mesenchyme (1)
Vomeronasal organ (1)
Olfactory epithelium (1)
Whole organism (1)
Cortex of kidney (1)
Vaginal epithelium (1)

Disease

Normal (90)
Breast cancer (43)
Colon cancer (18)
Neuroblastoma (9)
Prostate cancer (8)
Colorectal cancer (6)
Chronic lymphocytic leukemia (6)
Glioblastoma (6)
Melanoma (5)
Adenocarcinoma (5)
Reference (4)
Acute myeloid leukemia (4)
Rheumatoid arthritis (3)
Pre-diabetic (3)
NA (3)
Mammary tumor (3)
Not applicable (3)
Active Crohn's disease (2)
ACUTE MYELOID LEUKEMIA (2)
Asthma (2)
Squamous Cell Carcinoma (2)
Primary tumor (2)
Malignant melanoma (2)
Leukemia (2)
Uncontrolled asthma (1)
Rhinitis (1)
Rhinitis with controlled asthma (1)
Non-active ulcerative colitis (1)
Active ulcerative colitis (1)
Invasive breast cancer (1)

Technology Type

Illumina HiSeq 2000 (24)
Illumina MiSeq (13)
Illumina HiSeq 2500, ILLUMINA (12)
ILLUMINA, Illumina HiSeq 2500 (7)
ILLUMINA, Illumina HiSeq 2000 (4)
Illumina HiSeq 2500 (4)
Illumina HiSeq 2000, ILLUMINA (3)
Illumina Genome Analyzer II (3)
Illumina MiSeq, ILLUMINA (2)
Illumina HiSeq 4000, ILLUMINA (2)
Illumina HiSeq 2500, ILLUMINA, Illumina HiSeq 2000 (2)
ILLUMINA, Low Pass Whole Genome Sequencing (LP-WGS), Illumina NovaSeq 6000, Illumina Genome Analyzer II, SNP array (1)
Illumina MiSeq, HiSeq X Ten, NextSeq 500, Illumina HiSeq 4000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina CytoSNP 12 bead array, nanostring (1)
ILLUMINA, Illumina HiSeq 1000 (1)
Illumina humanomniexpress-24-v1-1, humanomniexpress-24-v1-1, Illumina HumanOmniExpress-12-v1-0, Illumina HumanOmni1-Quad_v1-0, HumanOmni25-8v1-2_A1, HumanOmniExpress-12-v1-0 (1)
ILLUMINA, NextSeq 500, HiSeq X Ten (1)
Illumina Multi-EthnicGlobal_A1 (1)
Illumina InfiniumCoreExome-24v1-1_A (1)
SNP6, ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA, NextSeq 500 (1)
ILLUMINA, HiSeq X Ten (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA, Illumina MiSeq, NextSeq 500 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
HiSeq X Ten, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HumanCoreExome-12v1-0_A and HumanCoreExome-24v1-0_A, Illumina Human670-QuadCustom_v1_A (1)
Illumina HumanMethylation450 (1)
Illumina HumanMethylation 450K (1)

Instrument Platform

Illumina NovaSeq 6000 (354)
Illumina HiSeq 2500 (291)
NextSeq 500 (282)
Illumina HiSeq 2000 (246)
Illumina HiSeq 4000 (186)
Illumina MiSeq (77)
NextSeq 550 (70)
Scanning hardware (44)
Illumina NovaSeq X (43)
NextSeq 2000 (43)
Illumina Genome Analyzer II (41)
Illumina HiSeq 1500 (27)
Axon GenePix 4000B scanning hardware (23)
Illumina Genome Analyzer IIx (22)
GenePix 4000B [Axon Instruments] (19)
GenePix 4000A [Axon Instruments] (18)
Illumina HiSeq 3000 (18)
Axon GenePix 4000A scanning hardware (17)
Axon- GenePix4000B (15)
DNBSEQ-G400 (15)
Illumina HiSeq 1000 (14)
ScanArray Express HT (13)
Affymetrix GeneChip Scanner 3000 7G (11)
418 [Affymetrix] (10)
G2565BA DNA microarray scanner [Agilent] (10)
ArrayWoRx Biochip Reader [Applied Precision] (9)
Other (9)
Variable Atmosphere Incubator (9)
G2565AA DNA microarray scanner [Agilent] (8)
NA (8)

Publication Date

2010 (1844)
2013 (1557)
2014 (1520)
2015 (1358)
2012 (1351)
2011 (1224)
2016 (940)
2025 (755)
2008 (727)
2026 (673)
2021 (634)
2024 (629)
2022 (623)
2009 (607)
2023 (596)
2020 (547)
2017 (460)
2019 (420)
2007 (416)
2018 (360)
2006 (194)
2005 (187)
2004 (92)
2003 (21)
2002 (9)
2001 (3)

UNIPROT ID/AC

1433S_HUMAN (3)
AATC_MOUSE (3)
AATM_MOUSE (3)
ACAD9_MOUSE (3)
ACADL_MOUSE (3)
ACLY_MOUSE (3)
ACOC_MOUSE (3)
ACON_MOUSE (3)
ACSL1_MOUSE (3)
ACTB_HUMAN (3)
ACTG_HUMAN (3)
ACTN1_MOUSE (3)
ADHX_MOUSE (3)
AFG32_MOUSE (3)
AIMP1_MOUSE (3)
AK1A1_MOUSE (3)
AL9A1_MOUSE (3)
AMPB_MOUSE (3)
AMPL_MOUSE (3)
ANXA2_MOUSE (3)
AP1B1_MOUSE (3)
AP2A1_MOUSE (3)
API5_MOUSE (3)
APMAP_HUMAN (3)
APOC3_HUMAN (3)
ARP2_MOUSE (3)
AT1A1_HUMAN (3)
AT1B1_MOUSE (3)
AT2A2_MOUSE (3)
ATPA_MOUSE (3)

ENSEMBL ID

ENSG00000170477 (11)
ENSG00000147251 (5)
ENSG00000229353 (4)
ENSG00000247315 (4)
ENSBTAG00000003758 (3)
ENSBTAG00000004230 (3)
ENSBTAG00000006045 (3)
ENSBTAG00000012586 (3)
ENSBTAG00000015980 (3)
ENSBTAG00000020527 (3)
ENSBTAG00000022004 (3)
ENSBTAG00000001414 (2)
ENSBTAG00000001601 (2)
ENSBTAG00000002507 (2)
ENSBTAG00000008570 (2)
ENSBTAG00000013953 (2)
ENSBTAG00000014423 (2)
ENSBTAG00000015438 (2)
ENSBTAG00000019915 (2)
ENSBTAG00000033186 (2)
ENSBTAG00000040295 (2)
ENSBTAP00000044884 (2)
ENSG00000204131 (2)
ENSBTAG00000001928 (1)
ENSBTAG00000002457 (1)
ENSBTAG00000004553 (1)
ENSBTAG00000006263 (1)
ENSBTAG00000006898 (1)
ENSBTAG00000007606 (1)
ENSBTAG00000010336 (1)

CHEBI ID

CHEBI:16919 (34)
CHEBI:15891 (33)
CHEBI:30769 (33)
CHEBI:15428 (32)
CHEBI:16737 (28)
CHEBI:32816 (27)
CHEBI:16015 (26)
CHEBI:17368 (25)
CHEBI:17268 (24)
CHEBI:30915 (24)
CHEBI:15354 (24)
CHEBI:17596 (24)
CHEBI:16977 (23)
CHEBI:16958 (23)
CHEBI:18050 (23)
CHEBI:15971 (23)
CHEBI:17754 (22)
CHEBI:15741 (22)
CHEBI:6650 (22)
CHEBI:27266 (22)
CHEBI:18012 (22)
CHEBI:17568 (21)
CHEBI:17750 (21)
CHEBI:17203 (21)
CHEBI:16704 (21)
CHEBI:17895 (21)
CHEBI:17295 (21)
CHEBI:28300 (20)
CHEBI:24898 (20)
CHEBI:25017 (20)

Metabolite Name

Taurine (25)
Creatinine (25)
Creatine (22)
Hypoxanthine (21)
Adenine (17)
L-Tyrosine (17)
Inosine (17)
Leucine (16)
Betaine (16)
Ornithine (16)
Citric acid (16)
Phenylalanine (16)
Isoleucine (16)
Xanthine (16)
Tryptophan (16)
Glycine (15)
L-Arginine (15)
L-Histidine (15)
Choline (15)
L-Glutamine (15)
Glutamine (15)
Glycine (14)
Creatine (14)
Myo-inositol (14)
Valine (14)
Citrulline (14)
L-Threonine (14)
Tyrosine (14)
Beta-alanine (13)
L-Proline (13)

First Public Date

2014 (736)
2025 (580)
2024 (567)
2026 (526)
2023 (433)
2022 (391)
2020 (373)
2021 (357)
2019 (266)
2017 (239)
2018 (220)
2015 (161)
2016 (102)
2013 (86)
2012 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (7)
Agent-based model (1)
Differential equation model (1)
Constraint-based model (1)

Study status

Completed (12)
Recruiting (5)
Terminated (1)
Not yet recruiting (1)

Lab affiliation

Moffitt Cancer Center Tampa, FL, USA (9)
Head of the Curie Institute Mass Spectrometry Platform (6)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (4)
Director of Women’s Health Research Women’s Service Line Inova Health System (4)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (4)
Oregon Hearing Research Center Oregon Health & Science University Portland, OR, USA (4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (4)
Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon 34141, Republic of Korea (3)
Institute of Bioinformatics , International Technology Park, Bangalore, India (3)
Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, 451 Smyth Road, Ottawa, Ontario K1H 8M5, Canada (3)
Systems Biology Ireland, University College Dublin (3)
Univ. Bordeaux, INSERM, CRCTB, U 1045, F-33000 Bordeaux, France (3)
Centre of Molecular Inflammation Research (CEMIR, www.ntnu.edu/cemir) Dept. of Clinical and Molecular Medicine Norwegian University of Science and Technology (NTNU) Trondheim (2)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (2)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (2)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (2)
Dept. of Oncology-Pathology, Karolinska Institutet, SciLifeLab, Stockholm, Sweden (2)
Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (2)
Head of Laboratory Neuro-Oncology, Clinical and Cancer Proteomics, Neurology (2)
Head of Laboratory of Neuro-Oncology, Neurology, Clinical & Cancer Proteomics (2)
Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Systems Medicine of Chronic Lung Disease, Member of the German Center for Lung Research (DZL), Munich, Germany (2)
Institute of Bioinformatics, Bangalore (2)
LBPC-PPC, Montpellier University, IRMB CHU Montpellier, INM INSERM, Montpellier, Occitanie, France (2)
Laboratory for Functional Genome Analysis LAFUGA, Gene Center, LMU München, München, Germany, Feodor-Lynen-Straße 25, 81377 München (2)
Mucin Biology Group, Proteomics Laboratory, Department of Medical Biochemistry and Cell Biology, University of Gothenburg (2)
School of Biomedical Sciences, Faculty of Medicine and Health, UNSW Sydney (2)
The Institute of Cancer Research, London (2)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (2)
Tianjin Medical University (2)
Xi'an Jiaotong University (2)

Keyword

Fructose (1)
D-Xylose (1)
Primary Human Colorectal Tumors (1)
INC280 200 mg (1)
INC280 50 mg (1)
Erbitux 5mg/mL (1)
Mucosal lining (1)
Epithelium (1)
Head and neck (1)
Resistance to cetuximab/panitumumab (1)
SCCHN, (1)
Oral and nasal cavity (1)
Paranasal sinuses (1)
Pharynx (1)
Larynx (1)
Parotid glands (1)
Lympth nodes of neck (1)
Probe-based imaging of GI pre-malignant or malignant lesions (1)
Squamous cell carcinoma (1)
Large intestine (1)
C-MET inhibitor (1)
Gynaecological Cancer (1)
DCLK1 (1)
Serum Biomarker (1)
Barrett’s Esophagus (1)
Tumor Stem Cell Marker (1)
Metformin (1)
INC280 (1)
Radiotherapy (1)
Colon (1)

IsPrivate

False (10)

Submitter Keywords

TransQST (2)
Not Peer Reviewed (2)
COVID-19 (1)

Classification

bacteria (35)
fungi (7)
helminths (2)
viruses (2)
protozoa (1)

Modification

15.994915 (2)
57.021464 (2)
Not available (2)
2x(15)N labeled L-lysine (1)
4 (1)
42.010565 (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (7525)
RNA-seq of coding RNA (1533)
ChIP-seq (728)
Unknown experiment type (351)
Comparative genomic hybridization by array (255)
RNA-seq of coding RNA from single cells (251)
ChIP-chip by tiling array (222)
Other (222)
RNA-seq of non coding RNA (199)
Methylation profiling by array (183)
Methylation profiling by high throughput sequencing (167)
ChIP-chip by array (146)
Transcription profiling by tiling array (89)
RNA-seq of total RNA (82)
MicroRNA profiling by array (81)
Transcription profiling by RT-PCR (65)
DNA-seq (59)
Cell line - High-throughput sequencing (47)
Proteomic profiling by array (45)
ATAC-seq (34)
Genotyping by array (29)
Animal - High-throughput sequencing (27)
Transcription profiling by SAGE (26)
High-throughput sequencing (24)
Human - High-throughput sequencing (20)
Spatial transcriptomics by high-throughput sequencing (18)
RIP-seq (18)
MicroRNA profiling by high throughput sequencing (17)
CLIP-seq (16)
Single nucleus RNA sequencing (16)

Release Date

2014 (2149)
2010 (2136)
2015 (2068)
2013 (2035)
2022 (1974)
2021 (1932)
2012 (1798)
2023 (1777)
2016 (1772)
2020 (1667)
2011 (1626)
2025 (1555)
2024 (1461)
2019 (1337)
2018 (1291)
2017 (1183)
2008 (928)
2009 (919)
2007 (527)
2026 (364)
2006 (313)
2005 (281)
2004 (152)
2003 (65)
2002 (55)
2001 (38)
2000 (37)
1999 (25)
1998 (22)
1997 (15)

Location

United States (5)
Netherlands (4)
Australia (3)
China (2)
Spain (2)
Canada (2)
Greece (1)
Germany (1)
Italy (1)
Belgium (1)
Brazil (1)
United Kingdom (1)
Japan (1)
France (1)

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Spatiotemporal determination of metabolite activities in the corneal epithelium on a chip

The corneal epithelial barrier maintains the metabolic activities of the ocular surface by regulating membrane transporters and metabolic enzymes responsible for the homeostasis of the eye as well as the pharmacokinetic behavior of drugs. Despite its importance, no established biomimetic in vitro me...

2021-07-13 | MTBLS2274 | MetaboLights

Comparative metabolomics analysis of bronchial epithelium during barrier establishment after allergen exposure

BACKGROUND: Several studies have shown a correlation between an altered metabolome and respiratory allergies. The epithelial barrier hypothesis proposes that an epithelial barrier dysfunction can result in allergic diseases development. Der p 1 allergen from house dust mite is a...

2023-08-22 | MTBLS1755 | MetaboLights

Untargeted metabolomics profiling of intestinal epithelium-specific PCK1 knockout mice and littermate controls

Metabolic dysregulation may serve as a pivotal driver of inflammatory bowel disease, with the crosstalk between metabolism and the immune system emerging as a critical research focus. Ulcerative colitis patients exhibit enhanced glycolysis but suppressed ...

2026-06-24 | MTBLS12440 | MetaboLights

Transcription profiling of murine olfactory epithelium during neuronal death and replacement to study adult neurogenesis in the olfactory epithelium

Expression profiling of mRNA abundance in the adult mouse olfactory epithelium during replacement of OSNs forced by the bilateral ablation of the olfactory bulbs. The experiment was done on 6 week old male C57Bl/6 mice. Olfactory epithelium tissue samples were collected on days 1, 5, and 7 after b...

ORGANISM(S): Mus musculus

2007-09-04 | E-GEOD-2437 | biostudies-arrayexpress

RNA-seq of mouse small intestinal epithelium at different development stages (E18.5, P7, P21)

To assess the role of genes in development in mouse small intestinal epithelium, we isolated intestinal epithelium tissue from wild type mice at E18.5, P7 and P21. RNA was directly isolated used for RNA seq and were able to investigate gene expression at different development stages

ORGANISM(S): Mus musculus

2020-11-16 | E-MTAB-8713 | biostudies-arrayexpress

Transcription profiling of mouse olfactory epithelium frpm Harlequin mutants compared to littermate controls

Microarray analysis of gene expression in the olfactory epithelium of Harlequin mouse as a model of oxidative-stress induced neurodegeneration of olfactory sensory neurons Experiment Overall Design: Olfactory epithelium from Harlequin mutant mice and littermate control mice was microdissected for RN...

ORGANISM(S): Mus musculus

2008-06-14 | E-GEOD-6485 | biostudies-arrayexpress

H3K4me1 ChIP-seq of mouse small intestinal epithelium at different development stages (E18.5, P7, P21)

To assess the role of H3K4me1 in development in mouse small intestinal epithelium, we isolated intestinal epithelium tissue from wild type mice at E18.5, P7 and P21. This tissue was digested to single cells, sorted, fixed, isolated chromatin, and performed ChIP using an H3K4me1 antibody as described...

ORGANISM(S): Mus musculus

2020-11-16 | E-MTAB-8710 | biostudies-arrayexpress

Gene regulation by Sox9 in the conjunctival epithelium

Wild type or Sox9 fx/fx; Le-Cre-positive (Sox9-/-) conjunctival epithelium from the temporal, nasal and dorsal region of E14.5 mouse embryos was laser micodissected from three embryos of each genotype. Total RNA was purified and reverse transcribed and amplified using a NuGEN kit. cDNA was biotinyla...

ORGANISM(S): Mus musculus

2014-07-01 | E-GEOD-54796 | biostudies-arrayexpress

cryo-EM study of bovine retinal pigment epithelium cell lysate

This is the proteomic analysis data of bovine retinal pigment epithelium cell lysate subjected to cryo-EM study.

ORGANISM(S): Bos taurus (Bovine)

2023-01-02 | PXD037186 | Pride

The proteome of normal human iris, ciliary body, retinal pigment epithelium, and choroid

The iris is a fine structure that controls the amount of light that enters the eye. The ciliary body controls the shape of the lens and produces aqueous humor. The retinal pigment epithelium and choroid (RPE/choroid) are essential in supporting the retina and absorbing light energy that enters the e...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-11-29 | MSV000081766 | MassIVE

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42395 Results

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ENSEMBL ID

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BACKGROUND: Several studies have shown a correlation between an altered metabolome and respiratory allergies. The epithelial barrier hypothesis proposes that an epithelial barrier dysfunction can result in allergic diseases development. Der p 1 allergen from house dust mite is a...

OmicsDI is part of the ELIXIR infrastructure

Tweets