repertoire profiling

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Unknown (774)
Genomics (614)
Transcriptomics (419)
Proteomics (83)
Other (39)
Methylation profiling (25)
Metabolomics (5)
Genomic (1)
Multiomics (1)

Organisms

Homo sapiens (302)
Mus musculus (151)
Drosophila melanogaster (16)
Rattus norvegicus (8)
Arabidopsis thaliana (7)
Symbiodinium sp. A1 (4)
Malus domestica (4)
Caenorhabditis elegans (4)
Saccharomyces cerevisiae (4)
Xenopus laevis (3)
Bos taurus (3)
Equus caballus (2)
Schizosaccharomyces pombe (2)
Thermoplasma acidophilum DSM 1728 (2)
Bartonella henselae (2)
Zymoseptoria tritici (1)
Ephydatia fluviatilis (1)
Phlebiopsis gigantea (1)
Amphimedon queenslandica (1)
Moraxella catarrhalis RH4 (1)
Escherichia coli CFT073 (1)
Dysidea avara (1)
Dictyostelium discoideum (1)
Haemophilus influenzae (1)
Streptococcus agalactiae (1)
Neisseria meningitidis (1)
Ralstonia solanacearum (1)
Vitis vinifera (1)
Helicobacter pylori (1)
Anopheles gambiae (1)

Organisms

Homo sapiens (237)
Mus musculus (112)
Drosophila melanogaster (7)
Pseudomonas aeruginosa (5)
Caenorhabditis elegans (4)
Flavobacterium psychrophilum (3)
Arabidopsis thaliana (3)
Symbiodinium sp. A1 (2)
Malus domestica (2)
Macaca mulatta (2)
Trichoderma reesei (2)
Saccharomyces cerevisiae (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Sus scrofa (2)
Zea mays (2)
Escherichia coli (2)
Danio rerio (2)
Rattus norvegicus (2)
Phyllostomus discolor (1)
Leishmania amazonensis (1)
Aedes albopictus (1)
Papio hamadryas (1)
Trametes cinnabarina BRFM137 (1)
Mustela putorius furo (1)
Stylophora pistillata (1)
Oncorhynchus mykiss (1)
Xenopus tropicalis (1)
Lathyrus oleraceus (1)
Apis mellifera (1)
Cryptococcus neoformans (1)

Repository

ENA (532)
geo (303)
biostudies-arrayexpress (238)
pride (51)
EGA (32)
MassIVE (16)
MetaboLights (5)
iProX (4)
jPOST (2)
dbGaP (1)
GPMDB (1)
PAXDB (1)

Tissue

Cell culture (17)
Brain (4)
Permanent cell line cell (4)
B cell (2)
Blood plasma (2)
Early embryonic cell (2)
Leaf (2)
Lung (2)
Melanocyte (2)
Oocyte (2)
Spleen (2)
Accessory sex gland (1)
Blood serum (1)
Dendritic cell (1)
Diploid cell (1)
Egg (1)
Embryo (1)
HeLa cell (1)
Heart (1)
Hemolymph (1)
Leukocyte (1)
Liver (1)
Lung adenocarcinoma cell (1)
Macrophage (1)
Pancreatic ductal carcinoma cell (1)
Rheumatoid arthritis disease specific synovial fluid (1)
Saliva (1)
Skin (1)
Sperm (1)
T cell (1)

Disease

Melanoma (2)
IRAK-4 Q293X mutation (1)
Not Available (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Cancer (1)
Cerebrovascular disease (1)
Colon cancer (1)
Lung cancer (1)
Lymphoblastic lymphoma (1)
Lymphoma (1)
Lymphosarcoma (1)
Neuroblastoma (1)
Prostate adenocarcinoma (1)
Retinal detachment (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (24)
Bottom-up proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (8)
Mass spectrometry (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Data-independent acquisition (4)
Gel-based experiment (3)
SWATH MS (3)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2500 (14)
Illumina NovaSeq 6000 (14)
NextSeq 550 (6)
Orbitrap Fusion Lumos (6)
Illumina MiSeq (5)
NextSeq 500 (5)
Illumina HiSeq 2000 (4)
LTQ Orbitrap Elite (4)
Illumina HiSeq 4000 (3)
Orbitrap Exploris 480 (3)
Liquid Chromatography MS - negative - reverse phase (3)
MA900, Sony (2)
10x Chromium Controller (2)
Illumina NovaSeq X (2)
DNBSEQ-T7 (2)
LTQ Orbitrap Velos (2)
NanoString nCounter (1)
Flexercell FX-4000C (1)
AB SOLiD System (1)
ScanArray Express HT (1)
Illumina Genome Analyzer II (1)
FACS Aria (1)
HiSeq X Ten (1)
Instrument (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
TripleTOF 5600 (1)
TripleTOF 5600+ (1)

Publication Date

2023 (69)
2026 (64)
2024 (46)
2025 (40)
2021 (31)
2015 (31)
2022 (28)
2013 (28)
2014 (27)
2019 (26)
2018 (26)
2010 (26)
2020 (25)
2016 (25)
2012 (24)
2017 (22)
2008 (22)
2009 (20)
2011 (19)
2007 (14)
2004 (3)
2006 (2)
2005 (1)

UNIPROT ID/AC

283166.BH03420 (1)
283166.BH06860 (1)
283166.BH06890 (1)
283166.BH09080 (1)
283166.BH09420 (1)
283166.BH09470 (1)
283166.BH09490 (1)
283166.BH10530 (1)
283166.BH10720 (1)
283166.BH13650 (1)
283166.BH13700 (1)
A0A0G2Q8I8_BARHE (1)
A0A0G2Q8J4_BARHE (1)
A0A0G2Q8J9_BARHE (1)
A0A0G2Q8K2_BARHE (1)
A0A0G2Q8K8_BARHE (1)
A0A0G2Q8K9_BARHE (1)
A0A0G2Q8L7_BARHE (1)
A0A0G2Q8L8_BARHE (1)
A0A0G2Q8M3_BARHE (1)
A0A0H3LV82_BARHE (1)
A0A0H3LV87_BARHE (1)
A0A0H3LV91_BARHE (1)
A0A0H3LV96_BARHE (1)
A0A0H3LV99_BARHE (1)
A0A0H3LVA4_BARHE (1)
A0A0H3LVB7_BARHE (1)
A0A0H3LVC1_BARHE (1)
A0A0H3LVC5_BARHE (1)
A0A0H3LVC8_BARHE (1)

CHEBI ID

CHEBI:139429 (1)
CHEBI:139424 (1)
CHEBI:139434 (1)
CHEBI:139451 (1)
CHEBI:139435 (1)
CHEBI:139411 (1)
CHEBI:139448 (1)
CHEBI:139460 (1)
CHEBI:139442 (1)
CHEBI:139410 (1)
CHEBI:139428 (1)
CHEBI:139449 (1)
CHEBI:139404 (1)
CHEBI:139422 (1)
CHEBI:139425 (1)
CHEBI:139440 (1)
CHEBI:139432 (1)
CHEBI:139415 (1)
CHEBI:139450 (1)
CHEBI:139439 (1)
CHEBI:139456 (1)
CHEBI:139454 (1)
CHEBI:139455 (1)
CHEBI:75435 (1)
CHEBI:75440 (1)
CHEBI:94167 (1)
CHEBI:139407 (1)
CHEBI:139464 (1)
CHEBI:139421 (1)
CHEBI:139423 (1)

Metabolite Name

4-O-trans-caffeoylquinic acid (1)
2-hydroxy-2-(4-hydroxybenzyl)succinic acid (1)
Dehydroabietic acid (1)
(3E)-4-[(1S)-1-Hydroxy-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-buten-2-yl beta-D-glucopyranoside (1)
(3R,5R)-3,4,5-tris{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}-1-hydroxycyclohexane-1-carboxylic acid (1)
3-(4-hydroxyphenyl)-1-{2,4,6-trihydroxy-3,5-bis(2S,3R,4R,5S,6R)[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]phenyl}propan-1-one (1)
(1S,3S,4R,5R)-3-{[(2E)-3-(3,4-dihydroxyphenyl)-2-propenoyl]oxy}-1,4,5-trihydroxycyclohexanecarboxylic acid (1)
(3E)-1-hydroxy-4-[(1R)-2,6,6-trimethyl-4-oxo-2-cyclohexen-1-yl]-3-buten-2-yl beta-D-glucopyranoside (1)
Sinapoyl D-glucoside (1)
(2E)-3-[4-(beta-D-Glucopyranosyloxy)-3-methoxyphenyl]acrylic acid (1)
(2E)-N-[2-(3,4-dihydroxyphenyl)ethyl]-3-(3,4-dimethoxyphenyl)acrylamide (1)
(3R)-3,7-dimethyl-1,6-octadien-3-yl 6-O-alpha-L-arabinopyranosyl-beta-D-glucopyranoside (1)
{2-[5-(hexopyranosyloxy)pent-2-en-1-yl]-3-oxocyclopentyl}acetic acid (1)
5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-1-benzopyran-3-yl 6-O-(6-deoxyhexopyranosyl)hexopyranoside (1)
8-[6-(3-{[6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranosyl]oxy}-5,7-dihydroxy-4-oxo-4H-1-benzopyran-2-yl)-2,3-dihydroxyphenyl]-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4H-1-benzopyran-3-yl 6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside (1)
Kaempferol 3-O-beta-D-galactoside (1)
Kaempferol 3-O-beta-D-glucoside (1)
2,6-dihydroxy-2-[(4-hydroxyphenyl)methyl]-3-oxo-2,3-dihydro-1-benzofuran-4-yl hexopyranoside (1)
5-{4-[4-(hexopyranosyloxy)-3,5-dimethoxyphenyl]tetrahydro-1H,3H-furo[3,4-c]furan-1-yl}-2-methoxyphenyl hexopyranoside (1)
[4-(4-hydroxy-3-methoxybenzyl)-2-(4-hydroxy-3-methoxyphenyl)tetrahydro-3-furanyl]methyl hexopyranoside (1)
4-[4-(4-hydroxy-3-methoxyphenyl)tetrahydro-1H,3H-furo[3,4-c]furan-1-yl]-2-methoxyphenyl hexopyranoside (1)
Trans-5-O-(4-coumaroyl)-D-quinic acid (1)
Gaultherin (1)
4-{(1S,3aR,4S,6aR)-4-[4-(hexopyranosyloxy)-3-methoxyphenyl]tetrahydro-1H,3H-furo[3,4-c]furan-1-yl}-2-methoxyphenyl hexopyranoside (1)
3,5-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-3,4-dihydro-2H-chromen-7-yl hexopyranoside (1)
Nicotiflorin (1)
2-(4-(3,4-Dichlorophenylureido)phenoxy)-2-methylpropionic acid (1)
Lexibulin (1)
PA(15:0/20:4(6E,8Z,11Z,14Z)+=O(5)) (1)
Mebeverine alcohol (1)

First Public Date

2026 (102)
2023 (68)
2024 (65)
2025 (60)
2022 (41)
2014 (37)
2021 (29)
2020 (28)
2019 (27)
2017 (22)
2015 (15)
2013 (15)
2018 (13)
2016 (10)

Classification

bacteria (10)
protozoa (3)
fungi (1)

Modification

4x(2)H labeled dimethylated L-lysine (1)
4x(2)H labeled dimethylated residue (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (108)
RNA-seq of coding RNA (62)
RNA-seq of coding RNA from single cells (15)
ChIP-seq (9)
RNA-seq of non coding RNA (9)
Proteomic profiling by array (6)
Other (5)
DNA-seq (5)
ChIP-chip by tiling array (3)
Human - High-throughput sequencing (3)
Transcription profiling by RT-PCR (3)
Transcription profiling by SAGE (1)
Baseline (1)
Unknown experiment type (1)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
Animal - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
Transcription profiling by tiling array (1)
Single nucleus RNA sequencing (1)
Methylation profiling by array (1)

Release Date

2025 (98)
2022 (91)
2021 (75)
2023 (73)
2020 (69)
2024 (65)
2018 (65)
2015 (60)
2019 (53)
2014 (53)
2016 (51)
2013 (39)
2010 (37)
2017 (34)
2012 (30)
2008 (27)
2011 (24)
2009 (22)
2026 (20)
2007 (13)
2004 (4)
2006 (3)
2005 (3)
2003 (3)

Lab affiliation

Li2D (3)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (2)
Antwerp University Faculty of Pharmaceutical, Biomedical and Veterinary Sciences Protein Chemistry, Proteomics and Epigenetic Signalling - PPES VITO, Unit Environmental Risk and Health (1)
Assistant Professor, Evolutionary Venomics Lab, Center for Ecological Sciences, Indian Institute of Science, Bangalore, India (1)
Associate Professor, Chemistry and Biochemistry, University of Texas at Arlington (1)
BioBix, Lab for Bioinformatics and Computational Genomics, Ghent University, Belgium (1)
Biomolecular Mass Spectrometry and Proteomics,Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, The Netherlands Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, the Netherlands (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Chan Zuckerberg Biohub, Stanford, CA 94025, USA (1)
College of Agronomy, Henan Agricultural University (1)
Croatian Institute for Brain Research and Department of Histology and Embryology, University of Zagreb School of Medicine, 10000 Zagreb, Croatia (1)
Department of Biochemistry, University of Oxford, UK (1)
Department of Biological Engineering, Massachusetts Institute of Technology (1)
Department of Biomedical, Surgical and Dental Sciences. University of Milan, Milan, Italy (1)
Department of Chemistry, Imperial College London (1)
Department of Diagnostic Sciences, Ghent University, Ghent, Belgium. Cancer Research Institute Ghent (CRIG), Ghent, Belgium. (1)
Department of Entomology BIO5 Institute Department of Ecology and Evolutionary Biology University of Arizona (1)
Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA; The Edison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO, USA; McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA (1)
Department of Laboratory Medicine and Advanced Biotechnologies, Istituto Mediterraneo per i Trapianti e Terapie ad Alta Specializzazione (IRCCS - ISMETT) Via Ernesto Tricomi, 5 - 90127 Palermo (1)
Department of Microbiology & Immunology, Cornell University College of Veterinary Medicine (1)
Department of Oncology, University Hospital of Lausanne, Ludwig Institute for Cancer Research, Lausanne, Switzerland. (1)
Department of Proteomics, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Dept. Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry (1)
Experimental Ophthalmo-Biology Group, Department of Cell Biology and Histology, University of the Basque Country UPV/EHU, Leioa, Spain (1)
Head of Proteomics at Monte Rosa Therapeutics (1)
Head of the Proteomics Core Facility, NAPI project manager, Institute of Immunology Rikshospitalet, Oslo, Norway (1)
IRCCS Fondazione Bietti, Rome (1)
IRIC-Université de Montréal (1)

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Single-cell immune repertoire sequencing of bone marrow plasma cells following infection and immunizations

We performed single-cell transcriptome and antibody repertoire sequencing of bone marrow plasma cells following protein (OVA and TNFR2) immunizations or infection with high dose LCMV clone 13.

ORGANISM(S): Mus musculus

2021-12-01 | E-MTAB-11096 | biostudies-arrayexpress

Direct on-swab metabolic profiling of vaginal microbiome:host interactions during pregnancy and preterm birth

The pregnancy vaginal microbiome contributes to risk of preterm birth, the primary cause of death in children under 5 years of age. Here we describe direct on-swab metabolic profiling by Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) for sample preparation-free characterisation of...

2021-09-23 | MTBLS717 | MetaboLights

TCR repertoire profiling of T cells expressing NK-cell markers

PRJEB40492 | ENA

A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status.

Not available

S-EPMC4489130 | biostudies-literature

Transcriptional and immune repertoire profiling of mismatch repair-deficient colorectal cancer

PRJNA1295433 | ENA

Profiling of the TCRβ repertoire in non-model species using high-throughput sequencing.

Not available

S-EPMC6072738 | biostudies-literature

Comprehensive Profiling of Rheumatoid Arthritis Antibody Repertoire

PRJNA561136 | ENA

Template-Based Assembly of Proteomic Short Reads For De Novo Antibody Sequencing and Repertoire Profiling.

Not available

S-EPMC9330293 | biostudies-literature

Benchmarking of mass spectrometry-based antibody repertoire profiling reveals extensive systematic biases

The serum antibody repertoire is crucial for long-term immune protection, holding significant immunological and biotechnological value. Bottom-up proteomics is the most widely used mass spectrometry (MS) technique for profiling the sequence diversity of serum antibodies. However, serum antibody bott...

ORGANISM(S): Homo sapiens (Human)

2025-12-04 | PXD055846 | Pride

Profiling of the Human Natural Killer Cell Receptor-Ligand Repertoire.

Not available

S-EPMC7935321 | biostudies-literature

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