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ProteomicsCharacterization of the tomato fruit pericarp proteome
In this work, we present an extended characterization of the proteome of the tomato pericarp in its ripe red stage. An extensive fractionation of peptides through high pH reverse phase was performed associated to LC-MS/MS analysis on a Sciex Triple-TOF 6600.
ORGANISM(S): Solanum lycopersicum 
2016-12-22 | PXD004932 | Pride
Tomato  solanum lycopersicum  pericarp  mass-spectrometry  triple-tof 6600 
ProteomicsProteomics analysis of Volvariella volvacea after cold treatment
The three independently grown mycelia of V. volvacea V23 or VH3 after chilling stress for 0h and 4h were used for Proteomics analysis. After tryptic digestion and iTRAQ labeling, the samples are separated into 20 components by one-dimensional chromatography, and then the NanoLC-ESI-MS/MS analysis is...
ORGANISM(S): Volvariella volvacea V23 
2020-01-28 | PXD013858 | Pride
Volvariella volvacea mycelium lc-msms 
ProteomicsThe ProCan90 HEK293 dataset - A Case Study and Methodology for OpenSWATH Parameter Optimization Using the ProCan90 Data Set and 45 810 Computational Analysis Runs
A collection of HEK293 SWATH-MS raw data files generated as part of the routine operation of the ProCan experimental facility. These files represent technical replicates each being an aliquot from the same pooled digest, with fifteen runs collected from each of the six Sciex Triple TOF 6600 mass spe...
ORGANISM(S): Homo sapiens (Human) 
2019-04-11 | PXD011093 | Pride
Human Lc-ms Procan 
MetabolomicsUntargeted serum metabolomics of ulcerative colitis patients vs healthy subjects using ultra-high performance liquid chromatography-quadrupole time-of-flight mass spectrometry
Metabolic profiling of serum samples were performed on an Agilent 1290 infinity system (Agilent technologies, Santa-Clara, California, USA) coupled to an AB SCIEX Triple TOF 6600 System (AB SCIEX, Framingham, MA, USA) with an electrospray ion (ESI) source in both positive and negative ion modes. The...
2024-09-27 | MTBLS7438 | MetaboLights
ProteomicsRed blood cells protein profile is modified in breast cancer patients
We characterized the proteomic composition of RBCs from 53 breast cancer patients (stages I-III and IV), compared with 33 healthy donors. For that, we performed two different proteomic analyses (LC-MS/MS in DDA mode-shotgun- and a SWATH-MS) using the Triple TOF 6600 technology.
ORGANISM(S): Homo sapiens (Human) 
2023-01-17 | PXD030936 | Pride
Red blood cells (rbcs)  breast cancer Metastasis 
ProteomicsComparison of Drosophila melanogaster adult and embryo proteome
Embryo and adult flies infected with Wolbachia pipientis or cured were lysed in a SDS containing buffer and digested with trypsin using in gel digestion. The resulting peptides were injected on a Sciex Triple-TOF 6600 in SWATH-MS mode. The data were analysed using Spectronaut 10 using the spectral l...
ORGANISM(S): Drosophila Melanogaster (ncbitaxon:7227) 
2018-08-10 | MSV000082812 | MassIVE
ProteomicsPlasma Proteomics Analysis of the Cooperative Health Research in South Tyrol (CHRIS) Study, QC Samples
The Cooperative Health Research in South Tyrol (CHRIS) study is a single-site population-based study aimed to investigate the genetic and molecular basis of common age-related chronic conditions and their interaction with lifestyle and environment. In recent work, we have been evaluating the impact ...
ORGANISM(S): Homo sapiens (Human) 
2024-07-08 | PXD052892 | Pride
Plasma Human 
ProteomicsPlasma Proteomics Analysis of the Cooperative Health Research in South Tyrol (CHRIS) Study, Study Pools
The Cooperative Health Research in South Tyrol (CHRIS) study is a single-site population-based study aimed to investigate the genetic and molecular basis of common age-related chronic conditions and their interaction with lifestyle and environment. In recent work, we have been evaluating the impact ...
ORGANISM(S): Homo sapiens (Human) 
2024-07-08 | PXD052861 | Pride
Plasma Human 
ProteomicsMARF1_APMS_Nishimura_V2
This set of submissions contains the mass spectrometry files for the manuscript by Tamiko Nishimura et al. that describes characterization of MARF1, titled "MARF1 is an endoribonuclease that interacts with the DCP1:2 decapping complex and degrades target mRNAs". Affinity purification of MARF1 is pe...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-08-27 | MSV000081483 | MassIVE
MetabolomicsThe effect and mechanism of gut flora metabolite deaminotyrosine on chronic inflammatory pain

This study focuses on deaminotyrosine DAT, a metabolite of gut flora, and systematically investigates its effect on chronic inflammatory pain as well as the underlying mechanism. The research takes high-fat diet HFD as a key entry point for the background, as HFD often leads to an imbalance in th...

2026-08-10 | MTBLS13212 | MetaboLights
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