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UnknownCouple Counseling and Pelvic Floor Muscle Training for Men Operated for Prostate Cancer and for Their Female Partners: Results From the Randomized ProCan Trial.
Not available
S-EPMC8240341 | biostudies-literature
UnknownDeePathNet: A Transformer-Based Deep Learning Model Integrating Multiomic Data with Cancer Pathways.
Not available
S-EPMC11652962 | biostudies-literature
UnknownPan-cancer proteomic map of 949 human cell lines.
Not available
S-EPMC9387775 | biostudies-literature
UnknownImproved identification and quantification of peptides in mass spectrometry data via chemical and random additive noise elimination (CRANE).
Not available
S-EPMC8711017 | biostudies-literature
ProteomicsThe ProCan90 HEK293 dataset - A Case Study and Methodology for OpenSWATH Parameter Optimization Using the ProCan90 Data Set and 45 810 Computational Analysis Runs
A collection of HEK293 SWATH-MS raw data files generated as part of the routine operation of the ProCan experimental facility. These files represent technical replicates each being an aliquot from the same pooled digest, with fifteen runs collected from each of the six Sciex Triple TOF 6600 mass spe...
ORGANISM(S): Homo sapiens (Human) 
2019-04-11 | PXD011093 | Pride
Human Lc-ms Procan 
ProteomicsStrategies to enable large-scale proteomics for reproducible research.
An experiment was designed to assess the reproducibility of SWATH-MS measurements collected from different mass spectrometers in a single facility over a period spanning approximately four months. Data were acquired with 90-minute gradient lengths at the Australian Cancer Research Foundation Interna...
ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast) 
2020-07-20 | PXD015912 | Pride
Swath  dia  mass spectrometry  reproducibility  procan 
ProteomicsMapping the Proteomic Landscape of Pancreatic Cancer: Prognostic Insights and Subtype Stratification
We conducted a comprehensive proteomic analysis on 115 PDA patient samples, with matched adjacent normal tissue and comprehensive clinical and molecular data. Differential abundance and pathway analyses identified upregulated proteins and pathways within key subgroups. Unsupervised consensus cluster...
ORGANISM(S): Homo sapiens (Human) 
2025-09-29 | PXD059074 | Pride
Survival analysis Signature Human Pancreatic Prognostic Swath-ms 
ProteomicsThe effect of storage time and temperature on the proteomic analysis of FFPE tissue sections
Formalin-fixed paraffin-embedded (FFPE) tissues are stable when stored at ambient temperature; they are primarily used for histopathology and immunohistochemistry (IHC). The use of FFPE tissues in molecular biological applications has increased over the years and they can be used for cancer proteomi...
ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat) 
2025-03-26 | PXD054596 | Pride
Proteomics Formalin-fixed paraffin-embedded (ffpe) Dia-ms Post-translational modification (ptm) Dda-ms 
ProteomicsPan-cancer proteomic map of 949 human cell lines (ProCan-DepMapSanger)
This pan-cancer cell line proteomic atlas comprises proteomic data acquired by data independent acquisition (specifically, SWATH) mass spectrometry for 949 cancer cell lines. Cell lines were processed in technical triplicate, with duplicates acquired on different mass spectrometers, alongside HEK293...
ORGANISM(S): Homo sapiens (Human) 
2022-07-13 | PXD030304 | Pride
Proteomics Dia Swath Cancer Cell line 
UnknownYouth at-risk for serious mental illness: methods of the PROCAN study.
Not available
S-EPMC6034268 | biostudies-literature
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