whole-fish proteomics

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Proteomics (77)
Unknown (21)
Transcriptomics (17)
Genomics (2)
Metabolomics (2)

Organisms

Andropogon gerardi (20)
Bacteria (20)
Canis lupus familiaris (20)
Cnidaria (20)
Cricetulus griseus (20)
Eukaryota (20)
Fasciola (20)
Hepatitis B virus (20)
Human betaherpesvirus 5 (20)
Madurella mycetomatis (20)
Mesocricetus auratus (20)
Miscanthus x giganteus (20)
Mus musculus (20)
Mycobacterium tuberculosis (20)
Danio rerio (7)
Mus musculus (6)
Homo sapiens (3)
cellular organisms (2)
Larimichthys crocea (1)
Bacteroides cellulosilyticus (1)
Dorea longicatena DSM 13814 (1)
Bacteria (1)
Caenorhabditis elegans (1)
Rattus norvegicus (1)
Sus scrofa (1)
Epinephelus fuscoguttatus x Epinephelus lanceolatus (1)
gut metagenome (1)
Clupeidae (1)
Oreochromis mossambicus (1)
Trematomus bernacchii (1)

Organisms

Pimephales promelas (1)

Repository

pride (20)
biostudies-arrayexpress (18)
PAXDB (18)
PeptideAtlas (17)
MassIVE (14)
PanoramaPublic (4)
jPOST (3)
MetaboLights (2)
iProX (1)
ENA (1)

Tissue

Brain (5)
Liver (5)
Heart (3)
Whole body (3)
Blood plasma (2)
Embryo (2)
Eye (2)
Fin (2)
Gall bladder (2)
Gill (2)
Gut (2)
Kidney (2)
Ovary (2)
Scale (2)
Skeletal muscle (2)
Skin (2)
Spinal cord (2)
Spleen (2)
Testis (2)
Cell culture (1)
Esophageal adenocarcinoma cell (1)
Gas bladder (1)
Intestinal epithelium (1)
Intestinal juice (1)
Long bone (1)
Malignant cell (1)
Neuroblastoma cell line (1)
Small intestine epithelium (1)
Swim bladder (1)
Tail (1)

Disease

Disease free (2)
Cardiovascular system disease (1)
Esophagus adenocarcinoma (1)
Neuroblastoma (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (14)
Bottom-up proteomics (4)
Data-independent acquisition (2)
Gel-based experiment (2)
NMR spectroscopy (1)
Mass spectrometry (1)
Data-dependent acquisition (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Agilent Q-ToF (15)
Orbitrap Exploris 480 (3)
Illumina HiSeq 4000 (2)
MaXis (2)
Q Exactive (2)
Q Exactive Plus (2)
LTQ Orbitrap Velos (2)
6520A Quadrupole Time-of-Flight LC/MS (1)
ABSciex Triple TOF5600 (1)
HFX Orbitrap (1)
Impact HD (1)
MS:1001581 (1)
Q Exactive HF-X (1)
Bruker (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2014 (33)
2022 (9)
2024 (8)
2016 (5)
2013 (5)
2021 (5)
2010 (4)
2020 (3)
2018 (3)
2025 (3)
2017 (3)
2023 (2)
2026 (2)
2019 (2)
2015 (1)
2012 (1)
2011 (1)
2009 (1)
2008 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

ENSEMBL ID

ENSDARG00000000103 (17)
ENSDARG00000001431 (17)
ENSDARG00000001915 (17)
ENSDARG00000001950 (17)
ENSDARG00000001993 (17)
ENSDARG00000002480 (17)
ENSDARG00000005039 (17)
ENSDARG00000005560 (17)
ENSDARG00000005791 (17)
ENSDARG00000006399 (17)
ENSDARG00000007219 (17)
ENSDARG00000009285 (17)
ENSDARG00000009484 (17)
ENSDARG00000010149 (17)
ENSDARG00000013078 (17)
ENSDARG00000016301 (17)
ENSDARG00000016393 (17)
ENSDARG00000017014 (17)
ENSDARG00000017624 (17)
ENSDARG00000018404 (17)
ENSDARG00000021124 (17)
ENSDARG00000022767 (17)
ENSDARG00000023323 (17)
ENSDARG00000025012 (17)
ENSDARG00000025301 (17)
ENSDARG00000025350 (17)
ENSDARG00000025635 (17)
ENSDARG00000027355 (17)
ENSDARG00000029406 (17)
ENSDARG00000031164 (17)

CHEBI ID

CHEBI:132542 (1)
CHEBI:156118 (1)
CHEBI:183249 (1)
CHEBI:183804 (1)
CHEBI:137590 (1)
CHEBI:72426 (1)
CHEBI:134587 (1)
CHEBI:74470 (1)
CHEBI:140951 (1)
CHEBI:140946 (1)
CHEBI:140940 (1)
CHEBI:134487 (1)
CHEBI:134242 (1)
CHEBI:65294 (1)
CHEBI:65302 (1)
CHEBI:65293 (1)
CHEBI:82750 (1)
CHEBI:183798 (1)
CHEBI:183799 (1)
CHEBI:183800 (1)
CHEBI:137552 (1)
CHEBI:132579 (1)
CHEBI:86472 (1)
CHEBI:85853 (1)
CHEBI:11805 (1)
CHEBI:18095 (1)
CHEBI:75555 (1)
CHEBI:28260 (1)
CHEBI:91315 (1)
CHEBI:85851 (1)

Metabolite Name

2-Oxobutyrate (1)
PI (40:6) (1)
PI (38:6).(16:0/22:6) (1)
PI (38:5)c (1)
PG (36:1)b.(18:0/18:1) (1)
PG (36:1)a.(18:0/18:1) (1)
PC (40:8)a.(18:2/22:6) (1)
PC (40:7)b.(18:1/22:6) (1)
PC (40:7)a.(18:1/22:6) (1)
PC (40:6).(18:0/22:6) (1)
PC (40:5)a.(18:0/22:5) (1)
PC (38:6)c.(18:2/20:4) (1)
PC (38:6)a.(16:0/22:6) (1)
PC (38:4).(18:0/20:4) (1)
PC (38:3).(18:0/20:3) (1)
PC (38:2)a.(18:0/20:2) (1)
PC (38:1).(18:0/20:1) (1)
PC (37:1).(18:0/19:1) (1)
PC (36:6).(14:0/22:6) (1)
PC (36:5)a.(16:0/20:5) (1)
PC (36:3)b.(18:1/18:2) (1)
PC (36:2)c.(18:1/18:1) (1)
PC (36:2)b.(18:0/18:2) (1)
PC (36:2)a.(16:0/20:2) (1)
PC (36:1).(18:0/18:1) (1)
PC (36:1).(16:0/20:1) (1)
PC (36:0).(18:0/18:0) (1)
PC (35:2)a.(17:0/18:2) (1)
PC (35:1).(18:0/17:1) (1)
PC (35:1).(16:0/19:1) (1)

First Public Date

2021 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (5)
Animal - High-throughput sequencing (1)
ChIP-seq (1)

Release Date

2020 (7)
2013 (7)
2010 (4)
2015 (3)
2014 (3)
2021 (3)
2016 (2)
2012 (2)
2011 (2)
2009 (1)
2008 (1)
2026 (1)
2025 (1)
2018 (1)
2017 (1)

Lab affiliation

Facility manager, Senior research fellow (2)
Central Science Laboratory, University of Tasmania (1)
Department of Biology, Stanford University, USA (1)
Department of Biosciences and bioengineering, IIT Bombay, India, 400076 (1)
Department of Chemistry Michigan State University (1)
Department of Genome Sciences, University of Washington, Seattle, WA, United States (1)
Department of Marine Biology and Ecology, Rosenstiel School of Marine and Atmospheric Science, University of Miami, Miami, FL, USA (1)
Department of biosciences and Bioengineering, IIT Bombay (1)
Facility manager (proteomics mass spectrometry), Senior research fellow (1)
Faculty of Medicine and University Hospital of Cologne, Institute of Pathology, University of Cologne, Cologne, Germany (1)
Max Delbrück Center Robert-Rössle-Straße 10 13125 Berlin, Germany (1)
National Heart and Lung Institute, Faculty of Medicine, Imperial College London, UK (1)
Porto Conte Ricerche S.r.l. (1)
Sussex Neuroscience School of Life Sciences University of Sussex Falmer, Brighton BN1 9QG United Kingdom (1)
The University of Hong Kong (address: Swire Institute of Marine Science & School of Biological Sciences, Kadoorie Building, Pokfulam Road, Hong Kong SAR) (1)
The University of Melbourne (1)
Titular Professor Laboratory of Microbiology Andalusian Institute for Grape and Grapevine Research (CAIV) Marine and Environmental Sciences Faculty (CASEM) University of Cadiz (1)
Toxicology Centre, University of Saskatchewan (1)
UMR Transfrontaliere BioEcoAgro N° 1158, Univ. Artois, Univ. Lille, INRAe, Univ. Liege, UPJV, JUNIA, Univ. Littoral Côte d'Opale, ICV-Institut Charles Viollette, 62300 Lens, France. (1)

Tags

xref:PubMed:34896397 (1)

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Effect of ploidy on Salmon physiology - Whole fish larvae

This study investigated firstly, the impact of ploidy on growth performance and whole body composition of Atlantic salmon at different early freshwater stages (34 dph (days post-hatching) alevin; 109 dph; fry and 162 dph parr;) and secondly, whether phenotypic differences at these stages were reflec...

ORGANISM(S): Salmo salar (Atlantic salmon)

2017-12-14 | PXD005452 | Pride

Salmon larvae proteomics - Sequential protein extraction as an efficient method for improved proteome coverage in larvae of Atlantic salmon (Salmo salar)

Application of a solubility-based sequential protein extraction method to improve proteome coverage in whole fish

ORGANISM(S): Salmo salar (Atlantic salmon)

2016-06-13 | PXD003366 | Pride

Sequential extraction differential solubility whole-fish proteomics

Protein changes as robust signatures of fish chronic stress: a proteomics approach to fish welfare research.

Not available

S-EPMC7168993 | biostudies-literature

An analysis of tissue-specific alternative splicing at the protein level.

Not available

S-EPMC7561204 | biostudies-literature

Transcription profiling and proteomic profiling of rat colon mucosa from rats fed quercetin

Quercetin has been shown to act as an anti-carcinogen in experimental colorectal cancer (CRC). The aim of the present study was to characterise transcriptome and proteome changes occurring in the distal colon mucosa of rats supplemented with 10 g quercetin/kg diet for 11 weeks. Transcriptome data an...

ORGANISM(S): Rattus norvegicus

2008-06-15 | E-GEOD-7479 | biostudies-arrayexpress

Zebrafish_Heart

Heart, Agilent Q-TOF

ORGANISM(S): Danio Rerio (zebrafish)

2014-12-31 | PAe004707 | PeptideAtlas

Zebrafish_Kidney

Kidney, Agilent Q-TOF

ORGANISM(S): Danio Rerio (zebrafish)

2014-12-31 | PAe004706 | PeptideAtlas

Zebrafish_Spleen

Spleen, Agilent Q-TOF