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UnknownDDS: integrating data analytics transformations in task-based workflows.
Not available
S-EPMC10446079 | biostudies-literature
ProteomicsCritical Assessment of Metaproteome Investigation (CAMPI): a Multi-Lab Comparison of Established Workflows
Metaproteomics, the study of the collective proteome within a microbial ecosystem, has substantially grown over the past few years. This growth comes from the increased awareness that it can powerfully supplement metagenomics and metatranscriptomics analyses. Although metaproteomics is more challeng...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) Homo Sapiens (ncbitaxon:9606) 
2022-06-08 | MSV000089620 | MassIVE
GenomicsMutational signatures of colorectal cancers according to distinct computational workflows
Mutational signatures of colorectal cancers according to distinct computational workflows
PRJEB61897 | ENA
ProteomicsComparison of in-solution and SP3 sample processing workflows on HeLa cell samples
Comparison of in-solution and single-pot, solid-phase-enchanced sample preparation (SP3) sample processing workflows on HeLa cell samples, using different lysis buffers based on SDS and guanidine hydrochloride, for optimal analysis by liquid chromatography mass spectrometry (LC-MS)
ORGANISM(S): Homo sapiens (Human) 
2022-08-12 | PXD031918 | Pride
Proteomics Lc-ms Hela Sp3 In-solution digestion 
ProteomicsAdsorptive microtiter plates as solid supports in affinity purification workflows
Affinity ligands such as antibodies are widely used in (bio)medical research for purifying proteins from complex biological samples. These ligands are generally immobilized onto solid supports which facilitate the separation of captured protein from sample matrix. Adsorptive microtiter plates are co...
ORGANISM(S): Murine leukemia virus isolates 
2021-11-25 | PXD027530 | Pride
Transcription factor p65 Peptidyl-prolyl cis-trans isomerase fkbp5 Immuno capture Lc-ms/ms 
ProteomicsBenchmarking workflows for plasma proteomics
In this project we asses 5 different sample processing workflows for mass spectrometry based plasma proteomics and compare the results with a neat plasma workflow. The workflows evaluated includes protocols for abundant protein depletion (Top14 most abundant protein depletion and protein precipitati...
ORGANISM(S): Homo sapiens (Human) 
2026-05-04 | PXD070324 | Pride
Data independent acquisition Mass spectrometry Workflow assessment Astral Extracellular vesicles Plasma proteomics Enrichment strategies Depletion strategies 
GenomicsSystematic assessment of RNA-Seq experimental workflows for plasma cell-free transcriptome profiling
Systematic assessment of RNA-Seq experimental workflows for plasma cell-free transcriptome profiling
PRJEB90290 | ENA
GenomicsComparing ribosomal eDNA workflows for soil protist pathogen surveillance: detection, identification, and the limitations of reference databases in two arable field soils
V4, 18S and Operon eDNA workflows in arable soils
PRJEB90284 | ENA
GenomicsComparative Evaluation of Concentration and Extraction Workflows for Enhanced 16S rRNA Profiling of Wastewater Samples 16S rRNA Profiling of Wastewater Samples
Evaluation of concentration and extraction workflows for enhanced bacterial 16S rRNA profiling of urban wastewater samples
PRJNA1068008 | ENA
MetabolomicsA Python-based pipeline for preprocessing LC-MS data for untargeted metabolomics workflows
Preprocessing data in a reproducible and robust way is one of the current challenges in untargeted metabolomics workflows. Data curation in liquid chromatography-mass spectrometry (LC-MS) involves the removal of unwanted features (retention time; m/z pairs) to retain only high-quality data for subse...
2020-11-21 | MTBLS1919 | MetaboLights
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