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ProteomicsAn integrated model system to study biofilm-associated adaptation to antimicrobials and resistance evolution in Pseudomonas aeruginosa MPAO1
Using an integrated model system for reproducible growth of biofilms, a JPIAMR-funded consortium of researchers* studied the expressed proteome of P. aeruginosa strain MPAO1 under i) planktonic growth, and ii) biofilm formation conditions. The model system included, as a first step, the sequencing a...
ORGANISM(S): Pseudomonas aeruginosa 
2021-09-09 | PXD017122 | Pride
Comparative genomics Strain mpao1 Planktonic Biofilm Flow chamber Colistin Proteogenomics Shotgun proteomics Transposon sequencing Antibiotic resistance related proteins Genome sequencing Antimicrobials P. aeruginosa 
ProteomicsA proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships
Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, the third most common foodborne disease. Many different Listeria strains and seroptypes exist, however a proteogenomic resource which would provide a basis for bridging the gap in the molecular understanding b...
ORGANISM(S): Listeria Monocytogenes Egd-e (ncbitaxon:169963) Listeria Monocytogenes Str. Scott A (ncbitaxon:1027396) 
2019-06-01 | MSV000083881 | MassIVE
UnknownDiscovery of novel community-relevant small proteins in a simplified human intestinal microbiome.
Not available
S-EPMC7903761 | biostudies-literature
ProteomicsAn Optimised Proteomics Workflow for the Detection of Small Proteins.
Small open reading frame encoded proteins (SEPs) gained increasing interest during the last years due to their broad range of important functions in both, prokaryotes and eukaryotes. In bacteria, signalling, virulence or regulation of enzyme activities have been associated with SEPs. Nonetheless, th...
ORGANISM(S): Bacillus Subtilis 
2020-09-08 | PXD020514 | panorama
ProteomicsB.henselae - Whole organism, SC (Omasits,genome_res,2013)
abundance based on Spectral counting, Interaction consistency score: 8.9, Coverage: 86
ORGANISM(S): 283166 
2013-00-00 | 534428800 | PAXDB
ProteomicsT00
yeast cell-cycle experiment
ORGANISM(S): Saccharomyces Cerevisiae (yeast) 
2007-12-31 | PAe000093 | PeptideAtlas
ProteomicsA proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships
Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, a potentially fatal foodborne disease. Many different Listeria strains and serotypes exist, buthowever a proteogenomic resource that which would allow to bridges the gap in ourthe molecular understanding of th...
ORGANISM(S): Listeria Monocytogenes 
2021-01-26 | PXD014294 | panorama
ProteomicsC.elegans - Whole organism, L1, SC (Schrimpf,plos_biology,2009)
abundance based on Spectral counting, L1, Interaction consistency score: 14.4, Coverage: 30
ORGANISM(S): 6239 
2009-00-00 | 1631984665 | PAXDB
ProteomicsC.elegans - Whole organism, Embryo, SC (Schrimpf,plos_biology,2009)
abundance based on Spectral counting, embryo, Interaction consistency score: 12.0, Coverage: 25
ORGANISM(S): 6239 
2009-00-00 | 929936456 | PAXDB
ProteomicsC.elegans - Whole organism, Dauer, SC (Schrimpf,plos_biology,2009)
abundance based on Spectral counting, Dauer, Interaction consistency score: 12.8, Coverage: 29
ORGANISM(S): 6239 
2009-00-00 | 1475773660 | PAXDB
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