An Lawrence C LC

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Unknown (123)
Proteomics (53)
Metabolomics (4)
Transcriptomics (3)

Organisms

Homo sapiens (23)
Tenualosa ilisha (6)
Pseudomonas putida KT2440 (5)
Arabidopsis thaliana (4)
Mus musculus (4)
Escherichia coli (3)
Chlamydia trachomatis (2)
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Repository

pride (52)
biostudies-arrayexpress (3)
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Technology Type

Mass Spectrometry (52)
Shotgun proteomics (18)
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Data-dependent acquisition (4)
Mass spectrometry (3)
All-ion fragmentation (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Q Exactive (1)
Q Exactive HF-X (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (14)
2024 (10)
2026 (9)
2022 (7)
2019 (6)
2023 (3)
2018 (3)
2021 (2)
2013 (1)
2008 (1)
2007 (1)
2020 (1)
2017 (1)
2015 (1)

CHEBI ID

CHEBI:133743 (1)
CHEBI:15689 (1)
CHEBI:15728 (1)
CHEBI:15741 (1)
CHEBI:15756 (1)
CHEBI:15891 (1)
CHEBI:15940 (1)
CHEBI:15956 (1)
CHEBI:16010 (1)
CHEBI:16040 (1)
CHEBI:16196 (1)
CHEBI:16235 (1)
CHEBI:16335 (1)
CHEBI:16449 (1)
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CHEBI:16494 (1)
CHEBI:16543 (1)
CHEBI:16634 (1)
CHEBI:16704 (1)
CHEBI:16708 (1)
CHEBI:16709 (1)
CHEBI:16737 (1)
CHEBI:16750 (1)
CHEBI:16811 (1)
CHEBI:16914 (1)
CHEBI:17123 (1)
CHEBI:17126 (1)
CHEBI:17151 (1)
CHEBI:17154 (1)
CHEBI:17164 (1)

Metabolite Name

(2,3-dihydroxy-3-methylbutanoate) (1)
(2E)-decenoyl-ACP (1)
(lipoate) (1)
(queuine) (1)
1-piperidine carboxylic acid (1)
2'-deoxyguanosine (1)
2'-deoxyuridine (1)
2-aminoadipic acid (1)
2-aminobutanoate (1)
2-oxoglutarate (1)
2-pyrrolidineacetic acid (1)
3-acetamidobutanal (1)
3-aminoadipic acid (1)
Alanine (1)
Biotin (1)
Citrulline (1)
Cytidine (1)
Decanoate (1)
Fumarate (1)
Glucose (1)
Glutamate (1)
Guanosine (1)
Hypoxanthine (1)
Inosine (1)
L-trans-4-methyl-2-pyrrolidinecarboxylic acid (1)
Lactate (1)
N-acetyl-glutamate (1)
N-methyl-L-proline (1)
N4-acetylaminobutanal (1)
PE 28:0 (1)

Study type

Transcription profiling by array (3)

Release Date

2024 (18)
2023 (17)
2025 (16)
2015 (11)
2013 (10)
2021 (10)
2022 (9)
2020 (7)
2014 (5)
2026 (4)
2018 (3)
2011 (3)
2010 (3)
2008 (2)
2017 (2)
2016 (2)
2012 (2)
2007 (1)
2019 (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (10)
Director CIFRI (3)
Director Cifri (3)
Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA. (2)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (2)
Moffitt Cancer Center Tampa, FL, USA (2)
1. ARC Centre of Excellence in Plant Cell Walls, School of BioSciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94702, USA (1)
1. School of Biosciences, The University of Melbourne, Melbourne, VIC 3010, Australia 2. Joint BioEnergy Institute and Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA (1)
1. Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, 3052, Victoria, Australia and Department of Medical Biology, The University of Melbourne, Royal Parade, Parkville, 3052, Victoria, Australia (1)
Center for Cancer Research, Massachusetts General Hospital, Boston MA, USA;Department of Chemistry and Chemical Biology, Harvard University, Cambridge MA, USA. (1)
Department Chair • MCG - Department of Cellular Biology & Anatomy, Augusta University (1)
Department of Biochemistry University of Cambridge Cambridge UK (1)
Department of Chemistry and Biocheimstry at The Ohio State University; Comprehensive Cancer Center, The Ohio State University (1)
Department of Chemistry, Univeristy of Kansas, Lawrence, KS, USA (1)
Department of Chemistry, University of Kansas, Lawrence KS, United States (1)
Department of Chemistry, University of Kansas, Lawrence, KS, United States (1)
Department of Medicine, Division of Endocrinology, University of Arizona College of Medicine (1)
Department of Medicine, Vanderbilt University Medical Center, United States (1)
Department of Oncology, LongHua Hospital, Shanghai University of Traditional Chinese Medicine, No. 725 Wanping South Road, Xuhui District, Shanghai, 200032, China. (1)
Department of Pathology and Medicine, University of California at San Diego, La Jolla, CA 92093, USA (1)
Department of Pharmacology and Toxicology, University of Texas Medical Branch Galveston, TX 77555 (1)
Department of Plant Science, McGill University, Montreal (1)
Department of Radiation Oncology, Weill Cornell Medicine, New York, NY, USA; Department of Pathology, University of Massachusetts Medical School, Worcester, MA, USA. (1)
Ecology and Evolutionary Biology, University of Kansas USA (1)
Eppley Institute University of Nebraska Medical Center (1)
Functional Genomics, University Medicine Greifswald, Germany (1)
Kavli Institute for Nanoscience Discovery, University of Oxford (1)
Monash University Molecular Biology and Biochemistry (1)
Pathology and Microbiology Department, University of Nebraska Medical Center, Omaha, NE, USA (1)
Senior Lecturer in Transfusion Medicine / Consultant Haematologist, University of Cambridge / NHS Blood and Transplant, Wellcome-MRC Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Puddicombe Way, Cambridge, CB2 0AW, United Kingdom (1)

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Molecular basis for multidrug efflux by an anaerobic-associated RND transporter

Bacteria can resist antibiotics and toxic substances within demanding ecological settings, such as low oxygen, extreme acid, and during nutrient starvation. MdtEF, a proton motive force-driven efflux pump from the resistance-nodulation-cell division (RND) superfamily, is upregulated in these cond...

2025-09-26 | MTBLS13050 | MetaboLights

Engineering an Extremely Hybrid PKS for Adipic Acid Production

Polyketide synthases (PKSs) are modular enzymes with exceptional potential as biocatalysts for producing non-native compounds. Here, we report the first PKS-based pathway for adipic acid (AA), an industrial monomer for nylon production, by engineering one of the most extensively hybridized PKS syste...

ORGANISM(S): Pseudomonas putida KT2440

2026-09-07 | PXD069956 | Pride

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics

Metagenomic sequencing provides a window into microbial community structure and metabolic potential; however, linking these data to exogenous metabolites that microorganisms process and produce (the exometabolome) remains challenging. Previously, we observed strong exometabolite niche partitioning a...

2018-07-31 | MTBLS492 | MetaboLights

Functional plasticity of HCO3- uptake and CO2 fixation in Cupriavidus necator H16

Uptake and fixation of CO2 are central to strategies for CO2-based biomanufacturing. Cupriavidus necator H16 has emerged as a promising industrial host for this purpose. Despite its prominence, the ability to engineer C. necator inorganic carbon uptake and fixation is underexplored. Here, we test th...

ORGANISM(S): Cupriavidus necator

2026-01-23 | PXD051976 | Pride

Gas fermentation Dab Rubisco Carbonic anhydrase C1 metabolism Co2 biomanufacturing

Development of Corynebacterium glutamicum as a monoterpene production platform

Monoterpenes are commonly known for their role in the flavors and fragrances industry and are also gaining attention for other uses like insect repellant and as potential renewable fuels for aviation. Corynebacterium glutamicum, a Generally Recognized as Safe microbe, has been a choice organism in i...

ORGANISM(S): Corynebacterium glutamicum

2024-02-28 | PXD044193 | Pride

Monoterpene biosynthetic production geraniol citronellol eucalyptol linalool citral geranic acid corynebacterium glutamicum

A Combined LC-MS and Immunoassay Approach to Characterize Preservative-Induced Destabilization of Human Papillomavirus Virus-like Particles Adsorbed to an Aluminum-Salt Adjuvant.

Not available

S-EPMC11209183 | biostudies-literature

Improving Breast Cancer Surgical Treatment Decision Making: The iCanDecide Randomized Clinical Trial.

Not available

S-EPMC5946719 | biostudies-literature

An Isoprenol Biosensor for Combinatorial High Throughput Strain Engineering in Pseudomonas putida

Our group has evaluated the productivity of the alcohol isoprenol (3-methyl-3-buten-1-ol), platform commodity chemical with attractive properties specifically as a diesel fuel blendstock and precursor for the bio-jetfuel DMCO, across a number of microbial hosts. While there are strengths and drawbac...

ORGANISM(S): Pseudomonas putida KT2440

2025-09-12 | PXD061547 | Pride

Biomanufacturing Biosensors Strain engineering High-throughput Jbei Biofuels Isoprenol P. putida

Inhibition of AhR improves cortical bone and skeletal muscle function via preservation of neuromuscular junctions

This project aimed to assess the role of pharmacological inhibition of the aryl hydrocarbon receptor (AhR) on skeletal muscle and cortical bone health in aged mice. As part of a broader systems biology approach, proteomic profiling was employed to investigate molecular mediators of neuromuscular jun...

ORGANISM(S): Mus musculus (Mouse)

2025-07-06 | PXD065529 | Pride

Lc-msms aryl hydrocarbon receptor proteomics

Proteomic Characterization of Male Hilsa (Tenualosa ilisha H35)

This study investigates the serum proteome dynamics of male Hilsa (Tenualosa ilisha), a species of significant ecological and economic importance, to better understand its functional roles in conservation, aquaculture, and population sustainability.

ORGANISM(S): Tenualosa ilisha

2025-05-20 | PXD062121 | Pride

Protein Proteomics Lc-ms/ms Hilsa

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