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Transcriptomics (109)
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prokaryotic environmental samples (3)
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mixed sample (1)
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Drosophila melanogaster (1)
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biostudies-arrayexpress (137)
pride (45)
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Mass Spectrometry (45)
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2014 (14)
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2012 (6)
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2017 (3)
2007 (3)
2008 (1)
2004 (1)

CHEBI ID

CHEBI:15611 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:16449 (2)
CHEBI:16704 (2)
CHEBI:16811 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:18012 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
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CHEBI:22660 (2)
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CHEBI:26271 (2)
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CHEBI:27570 (2)
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CHEBI:28044 (2)
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CHEBI:29016 (2)
CHEBI:32816 (2)
CHEBI:6650 (2)
CHEBI:78320 (2)
CHEBI:14314 (1)
CHEBI:15354 (1)

Metabolite Name

3-Hydroxybutyrate (1)
3-Hydroxyisovalerate (1)
Acetate (1)
Acetoin (1)
Adenine M+0 (1)
Adenine M+1 (1)
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Adenosine M+6 (1)
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Alanine (1)
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Butyrate (1)
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Choline (1)
Creatine (1)

First Public Date

2026 (4)
2019 (2)
2024 (1)
2023 (1)
2017 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (31)
RNA-seq of coding RNA (31)
Methylation profiling by high throughput sequencing (15)
ChIP-seq (9)
ChIP-chip by array (7)
Other (5)
RNA-seq of total RNA (5)
Transcription profiling by tiling array (4)
Bisulfite-seq (4)
Comparative genomic hybridization by array (4)
Methylation profiling by array (3)
High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Genotyping by array (2)
DNA-seq (2)
RNA-seq of coding RNA from single cells (2)
Differential (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
CLIP-seq (1)
Transcription profiling by RT-PCR (1)
RIP-seq (1)
Proteomic profiling by array (1)

Release Date

2022 (234)
2021 (214)
2023 (204)
2024 (194)
2025 (186)
2020 (151)
2019 (138)
2018 (119)
2015 (106)
2016 (96)
2014 (91)
2017 (87)
2011 (66)
2012 (63)
2010 (51)
2013 (45)
2009 (38)
2026 (37)
2008 (24)
2006 (13)
2007 (11)
2004 (6)
2003 (4)
2005 (3)
2002 (2)
1997 (2)
2001 (1)
1998 (1)

Lab affiliation

Cornell University Department of Microbiology (3)
STORM Therapeutics Limited, Cambridge, United Kingdom (3)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
Target discovery Institute (2)
1 Department of Molecular Neurosciences, Center for Brain Research, Medical University of Vienna, Spitalgasse 4, A-1090 Vienna, Austria; 2 Department of Neuroscience, Karolinska Institutet, Retzius väg 8, SE-17177 Stockholm, Sweden (1)
1 VIB Center for Medical Biotechnology, VIB, Ghent, East Flanders, 9052, Belgium 2 Department of Biomolecular Medicine, Ghent University, Ghent, East Flanders, 9052, Belgium (1)
1. School of Pharmacy and Bioengineering, Keele University, Keele, Staffordshire, UK 2. Midlands Centre for Spinal Injuries, RJAH Orthopaedic Hospital, Oswestry, Shropshire, UK. (1)
Advanced Research Centre (ARC) College of Medical, Veterinary and Life Sciences University of Glasgow, Glasgow, UK. (1)
Assistant Professor, Chemistry and Biochemistry, Biological Chemistry Member, Biochemistry, Biophysics & Structural Biology GPB Home Area (lab head) (1)
BSRC, University of St Andrews, UK (1)
Babraham institute (1)
Biology University of Minnesota Duluth (1)
Biomedical Sciences Mass Spectrometry and Proteomics Facility, Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife, KY16 9ST (1)
Biomedical Sciences Research Complex University of St Andrews (1)
Biomedical Sciences Research Complex, University of St Andrews (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Department of Chemistry University of Nebraska-Lincoln Lincoln, NE 68588 USA (1)
Department of Molecular Neurosciences, Center for Brain 1099 Research, Medical University of Vienna, Vienna, Austria (1)
Developmental Dynamics Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT (1)
Division of Systems Medicine, School of Medicine, Ninewells Hospital & Medical School, University of Dundee, Dundee, DD1 9SY, UK (1)
Hong Kong Baptist University (1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland (1)
Lab Head, UQ Diamantina Institute,The University of Queensland (1)
Mass Spectrometry Facility Barts Cancer Institute Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Max-Delbrück Center for Molecular Medicine (MDC) Robert-Rössle-Str. 10, 13125 Berlin, Germany (1)
STORM Therapeutics Limited Cambridge United Kingdom (1)
School of Biology, University of St Andrews, Biomedical Sciences Research Complex, St Andrews, Fife KY16 9ST, U.K. (1)
School of Infection and Immunity ,MVLS, University of Glasgow (1)
School of Medicine, University of St Andrews, St Andrews, Fife, KY16 9TF, Scotland, UK. (1)
School of Medicine, University of St Andrews, St Andrews, KY16 9TF, UK (1)

Tags

xref:PubMed:37426673 (1)
xref:EuropePMC:PMC12913226 (1)

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T. oceanicus adult tissues

PRJEB27211 | ENA

A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways [T-cells]

To characterize the largely unknown functions of oxidised methylcytosines (oxi-mC; 5hmC/5fC/5caC) in DNA, several sequencing protocols have been recently developed. Quantitative analysis is complicated because DNA methylation modifications need to be deconvoluted from the data which is affected by s...

ORGANISM(S): Mus musculus

2016-07-03 | E-GEOD-68575 | biostudies-arrayexpress

Tumour-associated antigenic peptides are present in the HLA class I ligandome of cancer cell line derived extracellular vesicles.

The recent success of monoclonal antibody checkpoint inhibitor therapies that enhance the ability of CD8+ T cells to detect cancer-related antigenic peptides has refocused the need to fully understand the repertoire of peptides being presented to the immune system. Whilst the peptide ligandome prese...

ORGANISM(S): Homo sapiens (Human)

2022-04-01 | PXD025345 | Pride

Nanomaterials trigger functional responses in primary human immune cells

Targeting the immune system with nanoparticles (NPs) to deliver immunomodulatory molecules emerged as a solution to address intra-tumoral immunosuppression and enhance therapeutic response. While the potential of nanoimmunotherapies in reactivating immune cells has been evaluated in several preclini...

ORGANISM(S): Homo sapiens

2024-11-15 | E-MTAB-14550 | biostudies-arrayexpress

Asymmetric cell division of T cells upon antigen presentation uses multiple conserved mechanisms.

Not available

S-EPMC3739982 | biostudies-literature

GABAergic neuronal IL-4R mediates T cell effect on memory.

Not available

S-EPMC9116260 | biostudies-literature

Effects of epithelial to mesenchymal transition on T cell targeting of melanoma cells.

Not available

S-EPMC4269118 | biostudies-literature

Phenotypic Changes on Mycobacterium Tuberculosis-Specific CD4 T Cells as Surrogate Markers for Tuberculosis Treatment Efficacy.