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MetabolomicsDiscovery of A-type procyanidin dimers in yellow raspberries by untargeted metabolomics and correlation based data analysis
Introduction:Raspberries are becoming increasingly popular due to their reported health beneficial properties. Despite the presence of only trace amounts of anthocyanins yellow varieties seems to show similar or better effects in comparison to conventional raspberries.Objectives:The a...
2016-08-23 | MTBLS333 | MetaboLights
MetabolomicsMaHPIC Experiment HuB - Metabolomics analysis of human plasma from patients infected with Plasmodium falciparum and P.vivax for discovery of diagnostic markers of malaria
MaHPIC Experimental Description:
This study is based on archived plasma from samples collected between 2011 and 2014. Patients in Thailand who were infected with Plasmodium falciparum (30 subjects), P. vivax (30 subjects), co-infected with P. falciparum and P. viv...
2018-09-05 | MTBLS664 | MetaboLights
TranscriptomicsDiscovery of novel isoforms of Huntingtin reveals a new hominid-specific exon
Huntington’s disease (HD) is a devastating neurological disorder that is caused by an expansion of the poly-Q tract in exon 1 of the Huntingtin gene (HTT). HTT is an evolutionarily conserved and ubiquitously expressed protein that has been linked to a variety of functions including transcriptional r...
ORGANISM(S): Homo sapiens 
2015-06-10 | E-GEOD-66769 | biostudies-arrayexpress
ProteomicsMutations in epitope flanking regions for SARS-CoV-2 nucleoprotein affect proteasomal processing to alter CD8+ T cell responses
Viral CD8+ epitopes are generated by the cellular turnover of viral proteins, predominantly by the proteasome1. Mutations located within viral epitopes can result in escape from memory T cells2. Focussing on two of the most dominant SARS-CoV-2 nucleoprotein CD8+ epitopes3,4, we identified mutations ...
ORGANISM(S): recombinant SARS coronavirus 
2023-10-24 | PXD032054 | Pride
Lc-ms/ms Sars-cov-2 T-cell Antigen Epitope 
ProteomicsThe Trypanosoma cruzi Antigen and Epitope Atlas: discovery of antibody specificities in human Chagas Disease patients across human populations
These assays represent an antigen discovery screening, and epitope mapping characterization. In this screening two complete proteomes from Trypanosoma cruzi, from two different strains (CL-Brener, Sylvio X10), were displayed in the form of short peptides (tiling array, overlapped) and assayed with p...
ORGANISM(S): Homo sapiens 
2022-08-20 | E-MTAB-11651 | biostudies-arrayexpress
GenomicsAnalysis of Genetic Factors in Melanoma-Antigen Discovery
Analysis of Genetic Factors in Melanoma-Antigen Discovery
PRJNA298937 | ENA
UnknownT cell antigen discovery using soluble vaccinia proteome reveals recognition of antigens with both virion and nonvirion association.
Not available
S-EPMC4119580 | biostudies-literature
ProteomicsMHCquant2 refines immunopeptidomics tumor antigen discovery
The identification of human leukocyte antigen (HLA)-presented peptides as targets of anti-cancer T cell response is pivotal for the development of novel immunotherapies. Mass spectrometry (MS)-based immunopeptidomics enables the detection of these peptides, yet confident identifications and thus imp...
ORGANISM(S): Homo sapiens (Human) 
2025-08-22 | PXD058436 | Pride
Immunopeptidomics Nf-core Mhcquant Pipeline Dda 
ProteomicsHuman Renal Tubular Anti-Brush Border Antigen (ABBA) Discovery
Discovery of target antigen resulting in autoimmune form of renal interstitial nephritis using a brush border biotinylation, affinity purification of target antigen using patient sera, and characterization of biotinylated species in the immunopurified complex. Results were confirmed by IF of patien...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-04-04 | MSV000080885 | MassIVE
GenomicsMultipathogen analysis of IgA and IgG antigen specificity for selected pathogens in milk produced by women from diverse geographical regions: The INSPIRE Study [IgA]
Multipathogen analysis of IgA and IgG antigen specificity for selected pathogens in milk produced by women from diverse geographical regions: The INSPIRE Study [IgA]
PRJNA688095 | ENA
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